RSC Advances
Page 16 of 18
DOI: 10.1039/C4RA06941B
6
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Alkaline singleꢀcell gel electrophoresis assay (Comet assay): An
alkaline singleꢀcell gel electrophoresis (SCGE) technique69 is a
neutral assay, first introduced by Östling and Johanson in 1984
which has been modified and extensively validated over the
years, and is now commonly referred to as the ‘comet assay’.70
DNA damage was quantified by adopting comet assay as
previously described.71 Cells used for the comet assay were
sampled from a monolayer during the growing phase, 24 h after
seeding. Cells were treated with complexes at IC50 dose and cells
60
65
7
8
5
9
10 were harvested by a trypsinization process. Normal agarose in
PBS (200 ꢂL of 1% solution, pH 7.4) at 65 °C was dropped
gently onto a fully frosted micro slide, covered immediately with
a cover slip, and then placed over a frozen ice pack for ~5 min.
The cover slip was removed after the gel had set. The cell
15 suspension from each samples, was mixed with 1% lowꢀmelting
agarose (LMA) at 37 °C in a 1:3 ratio. This mixture (100 ꢂL) was
quickly applied on top of the gel, coated over the micro slide, and
allowed to set as before. A third coating of 100 ꢂL of 1% LMA
was given on the gel containing the cell suspension and allowed
20 to set. After solidification of the agarose, the cover slips were
removed and the slides were immersed in iceꢀcold lytic solution
(2.5 M NaCl, 100 mM NaꢀEDTA, 10 mM Trisꢀbase and 0.1%
Triton X100, 10% DMSO, pH 10) and placed in a refrigerator at
4 °C. All the above operations were performed under low lighting
25 conditions to avoid DNA damage due to light. The slides, after
being removed from the lytic solution were placed horizontally in
an electrophoresis tank. The reservoirs were filled with
electrophoresis buffer (300 mM NaOH, 1 mM NaꢀEDTA, pH 13)
until the slides were just immersed in it and allowed to stand in
30 the buffer for 20 min (to allow DNA unwinding), after which
electrophoresis was carried out at 0.8 V/cm for 15 min. After
electrophoresis, the slides were removed, washed thrice in
neutralization buffer (0.4 M Tris, pH 7.5), and gently tapped to
dry. Nuclear DNA was stained with 20 ꢂL of propidium iodide
35 (50 ꢂg/mL). Photographs were obtained using an Inverted
florescence microscope at 20X magnification. The DNA contents
in the head and tail were quantified by using CASP software.
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Acknowledgements
AKR gratefully thanks UGC, New Delhi, for financial
40 assistance through the Major Research Project grant [F.No.39ꢀ
797/2010 (SR)]. The authors thank to SAIF, IITꢀM and CLRI,
Chennai for Single crystal XRD and EPR studies, respectively.
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