Ruthenium(II) Polypyridyl Complexes
227
Synthesis of [Ru(4HEPIP)Cl4]
sufficiently free of protein.[23] Concentration of CT-DNA was
determined by UV absorbance at 260 nm; extinction coefficient
The complex was synthesised by mixing RuCl3 ꢀ 3H2O
(0.53 g, 2 mmol) and 4HEPIP (0.89 g, 2.5 mmol) in 1 M HCl
(50 mL). The resulting mixture was stirred for ,30 min under
nitrogen, and then allowed to lay under a nitrogen atmosphere
for 10 days. The insoluble product [Ru(4HEPIP)Cl4] (65 %
yield) was collected by vacuum filtration and washed with
water, acetone, and diethyl ether and then dried under vacuum.
was 6600 Mꢁ1 cmꢁ1 [24] Stock solutions were stored at 48C and
.
used within five days.
Fluorescence titrations were performed at room temperature
to determine binding affinity between DNA and the complex.
The titration experiments were performed at a fixed ruthenium
concentration of 10 mM, to which increments of CT-DNA
solution was added until no emission was detected. Steady-state
emission quenching experiments using varying amounts of
[Fe(CN)6]4ꢁ as the quencher were performed in absence,
presence, and excess of DNA. [Fe(CN)6]4ꢁ was varied from
0–5 mM. The quenching constant was determined according to
the classical Stern–Volmer equation: [25]
Synthesis of [Ru(4-aminopyridine)44HEPIP]
(ClO4)2 ꢀ 2H2O (1)
This complex was synthesised by mixing [Ru(4HEPIP)Cl4]
(0.3 g, 0.5 mmol) and 4-aminopyridine (0.2 g, 2.0 mmol) in
DMF (20 mL). The resulting mixture was heated at reflux under
nitrogen atmosphere for 8 h. After cooling to room temperature,
the solution was filtered to remove small amounts of insoluble
components. The filtrate was reduced to 5 mL and then diluted
with 15 mL water. Upon dropwise addition of a saturated
solution of aqueous sodium perchlorate, a red precipitate
formed. The red solid was collected and washed with 2 mL of
ice cooled ethanol before being dried under vacuum and purified
by column chromatography on alumina using acetonitrile/
toluene (3/1) as eluent (72 % yield). (Found: C 45.90, H 4.24,
N 15.65. Anal. Calc. for C41H44Cl2N12O12Ru: C 45.98, H 4.29,
N 15.70 %). nmax(KBr)/cmꢁ1 3445 br (n, N–H), 1654 (n, C¼N),
1540 (n, C¼C), 550 (Ru–N). dH ([D6]DMSO) 1.41 (t, J ¼ 7.5,
3H, CH3), 4.23 (q, J ¼ 7.9, 2H, -OCH2), 6.61 (s, 1H, OH), 6.75
(t, J ¼ 6.8, 2H, H2), 7.1 (t, J ¼ 7.6, 8H, H15), 7.31 (s, 1H, H12),
7.42 (d, J ¼ 6.5, 1H, H8), 7.5 (d, J ¼ 7.5, 1H, H9), 7.75
(d, J ¼ 7.5, 2H, H3), 7.8 (d, J ¼ 7.7, 8H, H14), 7.97 (d, J ¼ 7.8,
2H, H1), 8.95 (s, 8H, NH2).
I0=I ¼ 1 þ Ksv½Qꢄ
where I0 and I are the luminescence intensities in the absence
and presence of quencher [Fe(CN)6]4ꢁ respectively, Ksv is a
linear Stern–Volmer quenching constant depending on the
ratio of the bound concentration of the complex to the concen-
tration of DNA, and [Q] is the concentration of the quencher
[Fe(CN)6]4ꢁ. In the plot of I0/I versus [Q], the linear Stern–
Volmer quenching constant Ksv is given by the slope.
Absorption titrations were performed in Tris buffer using
a fixed complex concentration (20 mM) to which increments of
the DNA stock solution was added. Solutions were allowed
to incubate for 5 min before the absorption spectra were
recorded. The intrinsic binding constant Kb of these complexes
to DNA were calculated by a non-linear least-square method
using Eqn 1:[26]
1=2
ðea ꢁ ef Þ=ðeb ꢁ ef Þ ¼ ðb ꢁ ðb2 ꢁ 2K2Ct½DNAꢄ=sÞ Þ=2KCt
Synthesis of [Ru(pyridine)44HEPIP](ClO4)2 ꢀ 2H2O (2)
ð1aÞ
This complex was synthesised by mixing [Ru(4HEPIP)Cl4]
(0.30 g, 0.5 mmol) and pyridine (0.02 mL, 2.0 mmol) in DMF
(20 mL). The resulting mixture was heated at reflux under
nitrogen atmosphere for 8 h. After cooling to room temperature,
the solution was filtered to remove small amounts of insoluble
components. The filtrate was reduced to 5 mL and then diluted
with 15 mL water. Upon drop wise addition of a saturated
aqueous solution of sodium perchlorate, a red precipitate
formed. The red solid was collected and washed with 2 mL of
ice cooled ethanol before being dried under vacuum and purified
by column chromatography on alumina using acetonitrile/
toluene (3/1) as eluent (70 % yield). (Found: C 49.10, H 3.52,
N 11.05. Anal. Calc. for C41H40Cl2N8O12Ru: C 49.00, H 3.50,
N 11.15 %). nmax(KBr)/cmꢁ1 3328 br (n, O–H, N–H), 1615
(n, C¼N), 1511, 1536 (n, C¼C), 532 (Ru–N). dH ([D6]DMSO)
1.45 (t, J ¼ 7.4, 3H, CH3), 4.2 (q, J ¼ 7.7, 2H, -OCH2), 6.68
(s, 1H, OH), 6.71 (t, J ¼ 6.7, 2H, H2), 6.93 (t, J ¼ 6.9, 8H, H15),
7.21 (s, 1H, H12), 7.33 (t, J ¼ 7.5, 4H, H16), 7.4 (d, J ¼ 7.6, 1H,
H8), 7.5 (d, J ¼ 7.5, 1H, H9), 7.55 (d, J ¼ 7.8, 2H, H3), 7.77
(t, J ¼ 7.8, 2H, H1), 7.8 (d, J ¼ 7.6, 8H, H14).
b ¼ 1 þ KCt þ K½DNAꢄ=2s
ð1bÞ
where [DNA] is the concentration of DNA, ea is the extinction
coefficient observed for the absorption band at given DNA
concentration, ef is the extinction coefficient of the free
complex without DNA, eb is the extinction coefficient of the
complex fully bound to DNA. K is the equilibrium binding
constant in Mꢁ1, Ct is the total metal concentration and s is the
binding site size. In plots of (eaꢁef)/(ebꢁef) versus [DNA], Kb is
given by the ratio of the slope to the intercept.
Viscosity measurements of complexes were carried out in
BPE-buffer (water bath maintained at 30 ꢃ 0.18C). Flow time
was measured with a digital stopwatch and every sample was
tested three times to get an average calculated time. The data are
presented as (Z/Z0)1/3 vs the concentration of [RuII]/[DNA],
where Z and Z0 are the viscosities of DNA in the presence and
absence of complex.
For the gel electrophoresis experiment, supercoiled pBR 322
DNA (0.1mg) was treated with the RuII complexes in TAE-buffer
(pH 8.0; 40mM Tris, 20mM acetic acid, 1 mM EDTA), and the
solution was then irradiated at room temperature with a UV lamp
(365nm, 10W). The samples were analysed by electrophoresis
for 1.5 h at 60V on a 0.8 % agarose gel in TAE-buffer. The
gel was stained with 1 mg mLꢁ1 ethidium bromide.
DNA Binding Assays
The DNA-binding experiments were performed at room
temperature. Buffer (5 mM Tris, 50 mM NaCl, pH ¼ 7.0; Tris ¼
tris(hydroxymethyl)aminomethane) was used for absorp-
tion and luminescence titrations and BPE-buffer (6 mM
Na2HPO4, 2 mM NaH2PO4, 1 mM Na2EDTA, pH ¼ 7; EDTA ¼
ethylenediaminetetraacetate) was used in viscosity measurements.
The UV absorbance of the CT-DNA at 260 and 280 nm in Tris-
buffer had a ratio of about ,1.9 : 1 indicating that the DNA was
Cell Culture and Cytotoxicity Assay
Standard MTT assay procedures were used,[27] to study the
effect of complexes on cell growth. A549, Du145, and HeLa cell