I.G. Logvinenko et al.
Journal of Fluorine Chemistry 246 (2021) 109799
4.2. General procedure for the preparation of 2-((
ω
-(trifluoromethoxy)
4.4. Sodium 3-(trifluoromethoxy)propane-1-sulfinate (29)
alkyl)thio)pyrimidines 22 and 27
The solution of sulfone 23 (1.58 g, 5.8 mmol) in MeOH (10 mL) was
added to the stirred ice-cold solution of MeONa (prepared from Na (134
mg, 5.8 mmol) and MeOH (20 mL)). The reaction mixture was allowed
to equilibrate to r.t. and left to react with stirring overnight. Then it was
evaporated at reduced pressure, the residue was triturated with MTBE
(10 mL) and filtered to give the title sulfinate 29. Yield: 1.01 g (81 %);
white powder. 1H NMR (500 MHz, D2O) δ 4.08 (tt, J = 6.7, 3.6 Hz, 2H),
2.92 (td, J = 6.7, 3.6 Hz, 2H), 2.03 (p, J = 6.7 Hz, 2H). 13C NMR (126
MHz, DMSO-d6) δ 121.4 (q, J = 253.4 Hz), 66.2, 47.2, 23.9. 19F NMR
(376 MHz, DMSO-d6) δ –60.8. LC/MS (CI): m/z = 208 [M–H+NH3]–.
Anal. calcd. for C4H6F3NaO3S: C 22.44; H 2.82; S 14.97. Found: C 22.53;
H 2.91; S 14.94.
K2CO3 (1.8 g, 13 mmol) was added to the stirred solution of
pyrimidine-2-thiol (1.23 g, 11 mmol) in DMF (20 mL) and the resulting
suspension was cooled to 10 ◦C followed by dropwise addition of triflate
21 or bromide 26 (10 mmol) maintaining the internal temperature
below 15 ◦C. The reaction mixture was allowed to equilibrate to r.t. and
left to react with stirring overnight. Then it was poured into ice-cold
water (100 mL) and extracted with EtOAc (3 × 40 mL). The combined
organic layer was sequentially washed with water (3 × 40 mL) and brine
(3 × 40 mL), dried (Na2SO4) and evaporated at reduced pressure to give
the title product 22 or 27.
4.2.1. 2-{[2-(Trifluoromethoxy)ethyl]thio}pyrimidine (22)
From triflate 21 (2.62 g, 10 mmol), pyrimidine-2-thiol (1.23 g, 11
mmol), and K2CO3 (1.8 g, 13 mmol). Yield 1.85 g (83%); yellow liquid.
1H NMR (400 MHz, CDCl3) δ 8.51 (d, J = 4.9 Hz, 2H), 6.99 (t, J = 4.9 Hz,
1H), 4.22 (t, J = 7.1 Hz, 2H), 3.42 (t, J = 7.1 Hz, 2H). 13C NMR (126
MHz, CDCl3) δ 170.9, 157.4, 121.5 (q, J = 255.1 Hz), 116.9, 65.6 (t, J =
3.2 Hz), 29.1. 19F NMR (376 MHz, CDCl3) δ –61.0. LC/MS (CI): m/z =
225 [M+H]+. Anal. calcd. for C7H7F3N2OS: C 37.50; H 3.15; N 12.50; S
14.30. Found: C 37.49; H 3.08; N 12.65; S 14.40.
4.5. S-[2-(Trifluoromethoxy)ethyl]ethanethioate (30)
Triflate 21 (13.0 g, 49 mmol) was added dropwise to the stirred
suspension of KSAc (7.94 g, 70 mmol) in MeCN (60 mL) maintaining the
internal temperature at 10–15 ◦C. The reaction mixture was allowed to
equilibrate to r.t. and left to react with stirring overnight. Then it was
poured into ice-cold water (200 mL) and extracted with Et2O (4 × 50
mL). The combined organic layer was sequentially washed with water
(1 × 50 mL) and brine (1 × 50 mL), dried (Na2SO4) and evaporated at
atmospheric pressure and distilled to give the title product 30. Yield
5.92 g (63%); yellow liquid; b.p. 102–105 ◦C. 1H NMR (500 MHz, CDCl3)
δ 4.03 (t, J = 6.5 Hz, 2H), 3.15 (t, J = 6.5 Hz, 2H), 2.35 (s, 3H). 13C NMR
4.2.2. 2-{[3-(Trifluoromethoxy)propyl]thio}pyrimidine (27)
From bromide 26 (1.04 g, 5 mmol), pyrimidine-2-thiol (0.61 g,
5.5 mmol), and K2CO3 (1.8 g, 13 mmol). Yield 0.86 g (80%); yellow
liquid. 1H NMR (500 MHz, DMSO-d6) δ 9.09 (d, J = 4.8 Hz, 2H), 7.86
(t, J = 4.8 Hz, 1H), 4.20 (t, J = 6.5 Hz, 2H), 3.75–3.66 (m, 2H), 2.12
(p, J = 6.5 Hz, 2H). 13C NMR (126 MHz, DMSO-d6) δ 165.1, 159.7,
125.3, 121.6 (q, J = 256.4 Hz), 66.7, 47.4, 22.3. 19F NMR (376 MHz,
DMSO-d6) δ –59.4. LC/MS (CI): m/z = 239 [M+H]+. Anal. calcd. for
C8H9F3N2OS: C 40.33; H 3.81; N 11.76; S 13.46. Found: C 40.71; H
3.64; N 11.72; S 13.55.
(151 MHz, CDCl3) δ 194.6, 121.4 (q, J = 255.3 Hz), 65.6, 30.5, 27.7. 19
F
NMR (376 MHz, CDCl3)
δ –61.3. LC/MS (CI): m/z = 146
[M–CH3COH+H]+. Anal. calcd. for C5H7F3O2S: C 31.92; H 3.75; S
17.04. Found: C 32.24; H 3.87; S 16.97.
4.6. General procedure for the preparation of isothiuronium salts 31 and
32
Triflate 21 or bromide 26 (0.4 mol) was dissolved in dioxane (1L),
then thiourea (30.5 g, 0.4 mol) was added and the resulting mixture was
refluxed overnight. The volatiles were evaporated at reduced pressure,
the residue was dissolved in water (200 mL) and also evaporated at
reduced pressure. This procedure was repeated two times more in order
to remove the dioxane traces from the target product 31 or 32.
4.3. General procedure for the preparation of 2-{[ω-(trifluoromethoxy)
alkyl]sulfonyl}pyrimidines 23 and 28
The solution of sulfide 22 or 27 (1 mmol) in CH2Cl2 (5 mL) was
cooled to 0 ◦C followed by portionwise addition of MCPBA (345 mg, 2
mmol) at the above temperature. The reaction mixture was allowed to
equilibrate to r.t. and left to react with stirring overnight. Then it was
filtered and the filtrate was evaporated at reduced pressure to give crude
sulfone 23 or 28.
4.6.1. 2-[2-(Trifluoromethoxy)ethyl]isothiouronium
trifluoromethanesulfonate (31)
From triflate 21 (105 g, 0.4 mol) and thiourea (30.5 g, 0.4 mol). Yield
134 g (99%); yellowish crystals; m.p. 80–82 ◦C. 1H NMR (400 MHz,
DMSO-d6) δ 9.15 (s, 2H), 8.97 (s, 2H), 4.29 (t, J = 5.7 Hz, 2H), 3.53 (t, J
= 5.7 Hz, 2H). 13C NMR (126 MHz, DMSO-d6) δ 169.0, 120.6 (q, J =
322.2 Hz), 121.1 (q, J = 254.3 Hz), 66.2 (q, J = 3.0 Hz), 29.2. 19F NMR
(376 MHz, DMSO-d6) δ –59.7, –78.3. LC/MS (CI): m/z = 189 [M+H]+.
Anal. calcd. for C5H8F6N2O4S2: C 17.76; H 2.38; N 8.28; S 18.96. Found:
C 17.94; H 2.54; N 8.07; S 18.75.
4.3.1. 2-{[2-(Trifluoromethoxy)ethyl]sulfonyl}pyrimidine (23)
From sulfide 22 (224 mg, 1 mmol) and MCPBA (345 mg, 2 mmol).
The crude product was used in subsequent step without further pu-
rification. Yield 200 mg (78%); yellowish liquid. 1H NMR (400 MHz,
DMSO-d6) δ 9.10 (d, J = 4.9 Hz, 2H), 7.54 (t, J = 4.9 Hz, 1H), 4.49 (t,
J = 5.5 Hz, 2H), 4.12 (t, J = 5.5 Hz, 2H). 13C NMR (126 MHz, CDCl3) δ
165.4, 158.7, 124.0, 121.0 (q, J = 256.8 Hz), 60.7 (q, J = 3.7 Hz),
50.4. 19F NMR (376 MHz, CDCl3) δ –62.2. LC/MS (CI): m/z = 257
[M+H]+.
4.6.2. 2-[3-(Trifluoromethoxy)propyl]isothiouronium bromide (32)
From bromide 26 (41.4 g, 0.2 mol) and thiourea (16.0 g, 0.2 mol).
1
◦
Yield 56.6 g (99%); yellowish crystals; m.p. 52–54 C. H NMR (400
MHz, DMSO-d6) δ 6.89 (s, 2H), 4.20 (t, J = 6.6 Hz, 2H), 3.13–3.00 (m,
2H), 2.07 (p, J = 6.6 Hz, 2H). 13C NMR (151 MHz, DMSO-d6) δ 170.0,
121.7 (q, J = 253.4 Hz), 66.9, 51.0, 23.9. 19F NMR (376 MHz, DMSO-d6)
δ –59.3. LC/MS (CI): m/z = 195/197 [M–CF3OH+Br]–. Anal. calcd. for
C5H10BrF3N2OS: C 21.21; H 3.56; N 9.90; S 11.32. Found: C 21.42; H
3.75; N 9.81; S 10.94.
4.3.2. 2-{[3-(Trifluoromethoxy)propyl]sulfonyl}pyrimidine (28)
From sulfide 27 (480 mg, 2 mmol) and MCPBA (690 mg, 4 mmol).
The crude product was purified by column chromatography (EtOAc as
eluent). Yield 230 mg (43%); colorless liquid. 1H NMR (500 MHz,
DMSO-d6) δ 8.50 (d, J = 4.8 Hz, 2H), 6.96 (t, J = 4.8 Hz, 1H), 4.10 (t, J
= 6.5 Hz, 2H), 3.23 (t, J = 6.5 Hz, 2H), 2.14 (p, J = 6.5 Hz, 2H). 13C NMR
(151 MHz, CDCl3) δ 171.9, 157.3, 121.6 (q, J = 254.3 Hz), 116.6, 65.8
(q, J = 3.2 Hz), 28.5, 26.7. 19F NMR (376 MHz, CDCl3) δ –61.3. LC/MS
(CI): m/z = 271 [M+H]+. Anal. calcd. for C8H9F3N2O3S: C 35.56; H
3.36; N 10.37; S 11.86. Found: C 35.74; H 3.50; N 10.43; S 12.24.
4.7. Oxidative chlorination of thioacetate 30
Thioacetate 30 (4.92 g, 26 mmol) was dissolved in a stirred mixture
5