Trapping of cycloSal-Pronucleotides
Journal of Medicinal Chemistry, 2008, Vol. 51, No. 20 6597
H-5′), 3.60 (s, 3H, OMe), 2.78 (t, 2H, J ) 7.2 Hz, H-8), 2.39 (t,
2H, J ) 7.5 Hz, H-9), 1.68, 1.62 (2 × d, 3H, J ) 0.9 Hz, Mehet),
1.23, 1.22 (2 × d, 3H, J ) 7.3 Hz, Me) ppm. 31P NMR (162 MHz,
1H decoupled, DMSO-d6): δ ) -9.25, -9.28 ppm.
5-L-Ala-propionyl-cycloSal-d4TMP (5g). 5-L-AlaOtBu-propio-
nyl-cycloSal-d4TMP (5e, 28 mg, 47 µmol) was dissolved in 10
mL of CH2Cl2, and an amount of 2 mL of TFA was added. After
2.5 h at room temperature, the solvent was removed in vacuo. The
residue was purified by preparative TLC (Chromatotron; CH2Cl2
[+0.5% HOAc]/MeOH, gradient elution 1-10%) and lyophilized
from CH3CN/H2O, 1:1 (v/v). Yield: 21 mg (39 µmol, 83%) of a
diastereomeric mixture (ratio 0.9:1.0) as a colorless foam. 1H NMR
(400 MHz, DMSO-d6): δ ) 12.39 (s, 1H, COOH), 11.35, 11.34 (2
× s, 1H, NHhet), 8.14 (d, 1H, J ) 7.2 Hz, NH-11), 7.24-7.15 (m,
2H, Hhet-6, H-4), 7.12-7.07 (m, 1H, H-6), 7.02, 7.00 (2 × d, 1H,
J ) 8.4 Hz, H-3), 6.81-6.77 (m, 1H, H-1′), 6.41, 6.35 (2 × ddd,
J ) 1.6 Hz, J ) 1.6 Hz, J ) 6.0 Hz, H-3′), 6.03-5.98 (m, 1H,
H-2′), 5.48-5.30 (m, 2H, H-7), 4.99-4.90 (m, 1H, H-4′), 4.36-4.14
(m, 3H, H-12, H-5′), 2.82-2.70 (m, 2H, H-8), 2.38 (t, 2H, J ) 7.6
Hz, H-9), 1.68, 1.62 (2 × d, 3H, J ) 1.0 Hz, Mehet), 1.23, 1.22 (2
× d, 3H, J ) 7.3 Hz, Me) ppm. 31P NMR (162 MHz, 1H decoupled,
DMSO-d6): δ ) -9.27, -9.30 ppm.
5-L-ProOMe-propionyl-cycloSal-d4TMP (5h). Quantities were
as follows: 5-propionyl-cycloSal-d4TMP acid (4, 50.0 mg, 108
µmol), DIPEA (38 µL, 0.22 mmol), L-proline methyl ester·HCl
(37 mg, 0.22 mmol), HOBt (18 mg, 0.12 mmol), DCC (30 mg,
0.14 mmol), dissolved in 1 mL dry DMF. First purification was
done by flash chromatography (CH2Cl2/MeOH, 9:1 v/v), then by
preparative TLC (Chromatotron; CH2Cl2/MeOH, gradient elution
0-5%). Yield: 51 mg (89 µmol, 82%) of a diastereomeric and
rotameric mixture as a colorless foam. 1H NMR (400 MHz, DMSO-
d6): δ ) 11.34 (s, 1H, NHhet), 7.35-7.25 (m, 1H, H-4), 7.22, 7.19
(2 × q, 1H, J ) 1.2 Hz, H-6het), 7.16-7.07 (m, 2H, H-6, H-3),
6.82-6.78 (m, 1H, H-1′), 6.42, 6.35 (2 × ddd, J ) 1.6 Hz, J )
1.6 Hz, J ) 6.0 Hz, H-3′), 6.06-5.98 (m, 1H, H-2′), 5.54-5.30
(m, 2H, H-7), 5.00-4.90 (m, 1H, H-4′), 4.60-4.20 (m, 3H, H-12,
H-5′), 3.67, 3.54, 3.61, 3.60 (4 × s, 3H, OMe), 3.55-3.37 (m, 2H,
H-11a), 2.81, 2.80 (2 × t, 2H, J ) 7.5 Hz, H-8), 2.55 (t, 2H, J )
7.6 Hz, H-9), 2.34-2.08 (m, 1H, H-11c), 2.06-1.70 (m, 3H, H-11b,
H-11c), 1.65, 1.62, 1.60, 1.59 (4 × d, 3H, J ) 0.8 Hz, Mehet) ppm.
31P NMR (162 MHz, 1H decoupled, DMSO-d6): δ ) -8.47, -8.75
ppm.
5-L-AlaOMe-propionyl-cycloSal-d4TMP (5d). Quantities were
as follows: 5-propionyl-cycloSal-d4TMP acid (4, 50.0 mg, 108
µmol), DIPEA (38 µL, 0.22 mmol), L-alanine methyl ester ·HCl
(30 mg, 0.22 mmol), HOBt (18 mg, 0.12 mmol), DCC (30 mg,
0.14 mmol), dissolved in 1 mL dry DMF. Purification was done
by flash chromatography (CH2Cl2/MeOH, 9:1 v/v). Yield: 56.0 mg
(102 µmol, 94%) of a diastereomeric mixture (ratio 0.9:1.0) as a
colorless foam. 1H NMR (400 MHz, DMSO-d6): δ ) 11.34, 11.33
(2 × s, 1H, NHhet), 8.31, 8.30 (2 × d, 1H, J ) 6.9 Hz, NH-11),
7.28-7.22 (m, 1H, H-4), 7.20, 7.19 (2 × q, 1H, J ) 1.2 Hz, H-6het),
7.15-7.08 (m, 2H, H-6, H-3), 6.82-6.76 (m, 1H, H-1′), 6.42, 6.35
(2 × ddd, J ) 1.8 Hz, J ) 1.8 Hz, J ) 6.0 Hz, H-3′), 6.05-5.99
(m, 1H, H-2′), 5.52-5.30 (m, 2H, H-7), 5.00-4.90 (m, 1H, H-4′),
4.40-4.20 (m, 3H, H-12, H-5′), 3.61, 3.60 (2 × s, 3H, OMe),
2.87-2.75 (m, 2H, H-8), 2.47-2.35 (m, 2H, H-9), 1.66, 1.59 (2 ×
d, 3H, J ) 1.1 Hz, Mehet), 1.25, 1.23 (2 × d, 3H, J ) 7.3 Hz, Me)
ppm. 31P NMR (162 MHz, 1H decoupled, DMSO-d6): δ ) -8.71,
-8.74 ppm.
5-L-AlaOtBu-propionyl-cycloSal-d4TMP (5e). Quantities were
as follows: 5-propionyl-cycloSal-d4TMP acid (4, 60.0 mg, 129
µmol), DIPEA (45 µL, 0.26 mmol), L-alanine tert-butyl ester ·HCl
(47 mg, 0.26 mmol), HOBt (22 mg, 0.14 mmol), DCC (36 mg,
0.17 mmol), dissolved in 1 mL dry DMF. Purification was done
by preparative TLC (Chromatotron; CH2Cl2/MeOH, gradient elution
0-2%). Yield: 53 mg (90 µmol, 70%) of a diastereomeric mixture
1
(ratio 0.9:1.0) as a colorless foam. H NMR (400 MHz, DMSO-
d6): δ ) 11.35, 11.34 (s, 1H, NHhet), 8.14 (d, 1H, J ) 7.0 Hz,
NH-11), 7.24-7.15 (m, 2H, Hhet-6, H-4), 7.12-7.07 (m, 1H, H-6),
7.02, 7.00 (2 × d, 1H, J ) 8.3 Hz, H-3), 6.82-6.75 (m, 1H, H-1′),
6.41, 6.34 (2 × ddd, J ) 1.6 Hz, J ) 1.6 Hz, J ) 6.0 Hz, H-3′),
6.03-5.98 (m, 1H, H-2′), 5.48-5.30 (m, 2H, H-7), 4.99-4.90 (m,
1H, H-4′), 4.36-4.20 (m, 2H, H-12, H-5′), 4.09 (m, 1H, H-12),
2.82-2.70 (m, 2H, H-8), 2.38 (t, 2H, J ) 7.5 Hz, H-9), 1.68, 1.62
(2 × s, 3H, Mehet), 1.38 (s, 9H, t-Bu), 1.23, 1.22 (2 × d, 3H, J )
5-L-ProOBn-propionyl-cycloSal-d4TMP (5i). Quantities were
as follows: 5-propionyl-cycloSal-d4TMP acid (4, 40 mg, 86 µmol),
DIPEA (30 µL, 0.17 mmol), L-proline benzyl ester ·HCl (42 mg,
0.17 mmol), HOBt (15 mg, 0.11 mmol), DCC (24 mg, 0.11 mmol),
dissolved in 2 mL dry DMF. Purification was done by preparative
TLC (Chromatotron; EtOAc/MeOH, gradient elution 0-2%). Yield:
46 mg (71 µmol, 83%) of a diastereomeric and rotameric mixture
1
7.1 Hz, Me) ppm. 31P NMR (162 MHz, H decoupled, DMSO-
d6): δ ) -9.15, -9.52 ppm.
5-L-AlaOBn-propionyl-cycloSal-d4TMP (5f fast and 5f slow).
Quantities were as follows: 5-propionyl-cycloSal-d4TMP acid (4,
30.0 mg, 65 µmol), DIPEA (22 µL, 0.13 mmol), L-alanine benzyl
ester·p-TsOH (46 mg, 0.13 mmol), HOBt (11 mg, 72 µmol), DCC
(18 mg, 85 µmol), dissolved in 1 mL dry DMF. Purification was
done by preparative TLC (Chromatotron; EtOAc/MeOH, gradient
elution 0-5%). Yield: 36 mg (58 µmol, 88%) of a diastereomeric
mixture (ratio 0.9:1.0) as a colorless foam. The diastereomers 5f fast
and 5f slow were enriched by means of preparative RP-HPLC
(CH3CN/H2O, 1:4) up to a ratio of 9:1 for each compound (as
1
as a colorless foam. H NMR (400 MHz, DMSO-d6): δ ) 11.35,
11.34 (2 × s, 1H, NHhet), 7.40-7.30 (m, 5H, Haryl), 7.27-7.19 (m,
1H, H-4), 7.19, 7.16 (2 × q, 1H, J ) 1.2 Hz, H-6het), 7.15-7.10
(m, 1H, H-6), 7.05-6.95 (m, 1H, H-3), 6.82-6.76 (m, 1H, H-1′),
6.41, 6.35 (2 × ddd, J ) 1.8 Hz, J ) 1.8 Hz, J ) 6.0 Hz, H-3′),
6.05-5.98 (m, 1H, H-2′), 5.50-5.27 (m, 2H, H-7), 5.11 (s, 2H,
H-14), 4.99-4.91 (m, 1H, H-4′), 4.40-4.20 (m, 3H, H-12, H-5′),
3.55-3.37 (m, 2H, H-11a), 2.78 (t, 2H, J ) 7.5 Hz, H-8), 2.57 (t,
2H, J ) 7.6 Hz, H-9), 2.25-2.10 (m, 1H, H-11c1), 1.94-1.78 (m,
1
judged from 31P NMR). 5f fast: H NMR (400 MHz, MeOD): δ
) 7.40-7.27 (m, 6H, Hhet-6, Haryl), 7.20 (d, 1H, J ) 8.4 Hz, H-4),
7.06 (s, 1H, H-6), 6.98 (d, 1H, J ) 8.4 Hz, H-3), 6.90 (ddd, 1H, J
) 1.6 Hz, J ) 1.6 Hz, J ) 3.5 Hz, H-1′), 6.41 (ddd, 1H, J ) 1.4
Hz, J ) 1.4 Hz, J ) 6.0 Hz, H-3′), 6.01-5.96 (m, 1H, H-2′), 5.37
(dd, 2H, J ) 9.4 Hz, J ) 14.0 Hz, H-7), 5.15 (s, 2H, H-14),
5.02-4.96 (m, 1H, H-4′), 4.45-4.37 (q, 1H, J ) 7.3 Hz, H-12),
4.40-4.30 (m, 2H, H-5′), 2.95-2.80 (m, 2H, H-8), 2.50 (t, 2H, J
) 7.4 Hz, H-9), 1.77 (s, 3H, Mehet), 1.33 (d, 3H, J ) 7.3 Hz, Me)
ppm. 31P NMR (162 MHz, 1H decoupled, MeOD): δ ) -8.23 ppm.
5f slow: 1H NMR (400 MHz, MeOD): δ ) 7.36-7.29 (m, 6H,
3H, H-11b, H-11c2), 1.68, 1.61 (2 × d, 3H, J ) 1.1 Hz, Mehet
)
ppm. 31P NMR (162 MHz, 1H decoupled, DMSO-d6): δ ) -9.23,
-9.29 ppm.
Hydrolysis Studies of cycloSal Phosphate Triesters. Hydrolysis
studies of cycloSal nucleotides (phosphate buffer, pH 7.3 and pH
7.6) by HPLC analysis have been described before.20 Studies in
cell extracts and human serum (obtained from pooled blood samples
from the university hospital in Hamburg) were performed as
reported in ref 15 with different incubation times but without using
acetic acid to stop the reaction. Method 1 parameters were as
follows: 0-25 min, H2O/CH3CN gradient (5-100%); 25-35 min,
H2O/CH3CN (5%); flow rate 0.5 mL/min. Method 2 parameters
were as method 1 parameters except TBAH ion buffer (0.55 mM)
was used instead of water.
Hhet-6, Haryl), 7.18 (d, 1H, J ) 8.4 Hz, H-4), 7.05 (d, 1H, J ) 1.7
Hz, H-6), 6.94 (d, 1H, J ) 8.4 Hz, H-3), 6.87 (ddd, 1H, J ) 1.7
Hz, J ) 1.7 Hz, J ) 3.4 Hz, H-1′), 6.35 (ddd, 1H, J ) 1.7 Hz, J
) 1.7 Hz, J ) 6.0 Hz, H-3′), 6.00-5.96 (m, 1H, H-2′), 5.40-5.34
(m, 2H, H-7), 5.15 (s, 2H, H-14), 5.02-4.96 (m, 1H, H-4′),
4.45-4.30 (m, 3H, H-12, H-5′), 2.95-2.80 (m, 2H, H-8), 2.50 (t,
2H, J ) 7.5 Hz, H-9), 1.77 (d, 3H, J ) 1.1 Hz, Mehet), 1.34 (d,
31P NMR Hydrolysis Studies of cycloSal Phosphate Tri-
mesters. 31P NMR hydrolysis studies of cycloSal nucleotides 5
and 6 were carried out as described before.20
1
3H, J ) 7.3 Hz, Me) ppm. 31P NMR (162 MHz, H decoupled,
MeOD): δ ) -8.55 ppm.