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117.52, 76.63, 75.54, 32.05, 27.11, 24.69, 24.63 ppm; Anal. calcd for
C26H29N3O5: C 67.37, H 6.31, N 9.07, found: C 67.10, H 6.42, N 9.18.
2H), 1.43–1.26 ppm (m, 2H); 13C NMR (125.76 MHz, [D6]DMSO): d=
169.39, 157.41, 140.20, 138.97, 134.46, 129.22, 127.22, 127.03,
126.53, 120.18, 76.09, 32.58, 27.63, 25.31, 25.30 ppm; HRMS-ESI: m/
z [M+H]+ calcd for C19H24N3O4: 358.1761, found: 358.1763. HPLC
purity: 99.04%.
6-((3-([1,1’-Biphenyl]-4-yl)ureido)oxy)-N-(benzyloxy)hexanamide
1
8d: yellow solid (0.627 g, 70%): mp: 1488C; H NMR (500.13 MHz,
[D6]DMSO): d=10.98 (s, 1H), 9.50 (s, 1H), 8.80 (s, 1H), 7.71–7.66 (m,
2H), 7.64 (d, J=7.5 Hz, 2H), 7.61–7.56 (m, 2H), 7.50–7.28 (m, 8H),
4.79 (s, 2H), 3.78 (t, J=6.7 Hz, 2H), 1.98 (t, J=7.1 Hz, 2H), 1.70–
1.58 (m, 2H), 1.58–1.48 (m, 2H), 1.38–1.25 ppm (m, 2H); 13C NMR
(125.76 MHz, [D6]DMSO): d=169.66, 157.42, 140.19, 138.96, 136.45,
134.46, 129.22, 129.13, 128.65, 128.56, 127.22, 127.03, 126.53,
120.17, 77.12, 76.06, 32.54, 27.60, 25.19, 25.12 ppm; Anal. calcd for
C26H29N3O4: C 69.78, H 6.53, N 9.39, found: C 69.54, H 6.37, N 9.11.
Biological assays
Asexual in vitro antimalarial assays: Asexual-stage growth inhibition
assays were carried out using P. falciparum line 3D7 parasites and
the [3H]hypoxanthine incorporation method, essentially as previ-
ously described.[17,21] Test compounds diluted in parasite culture
media (RPMI 1640 supplemented with 10% heat-inactivated
human serum) were incubated with synchronous ring-stage para-
sites (0.25% parasitemia and 2.5% hematocrit) for 48 h at 378C
under standard parasite culture conditions, followed by the addi-
tion of [3H]hypoxanthine (0.5 mCi per well). After a further 24 h cul-
ture, [3H]hypoxanthine incorporation was measured by harvesting
onto 1450 MicroBeta filter mats (Wallac) and counting using
a 1450 MicroBeta liquid scintillation counter. Percentage inhibition
of growth relative to vehicle controls (0.5% DMSO) was deter-
mined for three independent experiments, carried out in triplicate
wells. Chloroquine was included in each assay as a positive control.
IC50 values were calculated using log–linear interpolation of inhibi-
tion curves[22] and are presented as mean ꢂSD for the three inde-
pendent assays.
General procedure for the preparation of HDAC inhibitors 1a–d:
A solution of the respective O-benzyl-protected hydroxamic acid
8a–d (0.5 mmol) in dry THF (50 mL) was hydrogenated (1 bar) at
room temperature in the presence of a catalytic amount of Pd/C
(10 wt%). Upon completion, the crude mixture was filtered
through Celite to remove the catalyst, and the filtrate was concen-
trated under reduced pressure. The residue was purified by
column chromatography using EtOAc or EtOAc/MeOH (9:1) as
eluent.
N-Hydroxy-6-((3-(4-propoxyphenyl)ureido)oxy)hexanamide 1a:
beige solid (0.070 g, 41%): mp: 1058C; 1H NMR (500.13 MHz,
[D6]DMSO): d=10.36 (s, 1H), 9.31 (s, 1H), 8.69 (s, 1H), 8.53 (s, 1H),
7.46–7.38 (m, 2H), 6.88–6.80 (m, 2H), 3.87 (t, J=6.6 Hz, 2H), 3.74 (t,
J=6.7 Hz, 2H), 1.96 (t, J=7.4 Hz, 2H), 1.75–1.65 (m, 2H), 1.65–1.56
(m, 2H), 1.56–1.46 (m, 2H), 1.39–1.24 (m, 2H), 0.96 ppm (t, J=
7.4 Hz, 3H); 13C NMR (125.76 MHz, [D6]DMSO): d=169.42, 157.73,
154.66, 132.17, 121.82, 114.57, 75.97, 69.40, 32.56, 27.62, 25.30,
25.27, 22.45, 10.79 ppm; HRMS-ESI: m/z [M+H]+ calcd for
C16H26N3O5: 340.1867, found: 340.1865; Anal. calcd for C16H25N3O5:
C 56.62, H 7.42, N 12.38, found: C 56.45, H 7.39, N 12.27.
Late-stage P. falciparum (IV–V) anti-gametocyte assays: This assay
was undertaken as described previously.[23] Briefly, highly synchro-
nous stage IV gametocytes, induced from transgenic NF45 P. falci-
parum parasites expressing the gametocyte-specific protein Pfs16,
fused to green fluorescent protein (NF-54-Pfs16-GFP), were isolated
by magnetic column on day 8 post-induction. Gametocytes were
added to 384-well imaging plates, containing test and control
compounds, at 33000 gametocytes per well, and the plates were
incubated for 72 h under reduced oxygen tension (5% CO2, 5% O2,
80% N2). Mitotracker Red CM-H2XRos (0.07 mgmLꢁ1, 5 mL) was
added to each well and incubated overnight as described above.
Gametocyte viability was evaluated on an OPERA (PerkinElmer)
High-Content Screening System. Images acquired for GFP and Mi-
totracker Red CM-H2XRos were overlaid, and the number of elon-
gated viable gametocytes per image was determined using
a script based on Acapella software, developed for use with the
OPERA imaging system. Relative percent inhibition relative to 0.4%
DMSO (vehicle control) and 5 mm puromycin was calculated, and
the mean IC50 values ꢂSD were determined by four-parameter
nonlinear regression analysis, sigmoidal dose–response (variable
slope) fit using Prism 4.0 for two separate experiments in quadru-
plicate point.
6-((3-(4-Ethoxyphenyl)ureido)oxy)-N-hydroxyhexanamide
1b:
white solid (0.073 g, 45%): mp: 938C; 1H NMR (500.13 MHz,
[D6]DMSO): d=10.35 (s, 1H), 9.31 (s, 1H), 8.67 (s, 1H), 8.53 (s, 1H),
7.42 (d, J=8.6 Hz, 2H), 6.83 (d, J=8.6 Hz, 2H), 3.97 (q, J=6.9 Hz,
2H), 3.74 (t, J=6.7 Hz, 2H), 1.96 (t, J=7.5 Hz, 2H), 1.68–1.57 (m,
2H), 1.56–1.47 (m, 2H), 1.39–1.25 ppm (m, 5H); 13C NMR
(125.76 MHz, [D6]DMSO): d=168.93, 157.25, 154.03, 131.73, 121.35,
114.06, 75.51, 62.94, 32.09, 27.16, 24.84, 24.82, 14.61 ppm; HRMS-
ESI: m/z [M+H]+ calcd for C15H24N3O5: 326.1710, found: 326.1708;
Anal. calcd for C15H23N3O5: C 55.37, H 7.13, N 12.91, found: C 55.12,
H 7.00, N 12.72.
N-Hydroxy-6-((3-(4-phenoxyphenyl)ureido)oxy)hexanamide 1c:
grey solid (0.187 g, 63%): mp: 1078C; 1H NMR (500.13 MHz,
[D6]DMSO): d=10.36 (s, 1H), 9.44 (s, 1H), 8.74 (s, 1H), 8.68 (s, 1H),
7.64–7.52 (m, 2H), 7.40–7.32 (m, 2H), 7.09 (t, J=7.4 Hz, 1H), 7.00–
6.88 (m, 4H), 3.75 (t, J=6.7 Hz, 2H), 1.96 (t, J=7.4 Hz, 2H), 1.69–
1.57 (m, 2H), 1.56–1.46 (m, 2H), 1.40–1.24 ppm (m, 2H); 13C NMR
(125.76 MHz, [D6]DMSO): d=168.90, 157.47, 157.08, 151.01, 134.88,
129.80, 122.67, 121.25, 119.26, 117.52, 75.57, 32.09, 27.14, 24.82,
24.80 ppm; HRMS-ESI: m/z [M+H]+ calcd for C19H24N3O5: 374.1710,
found: 374.1712; Anal. calcd for C19H23N3O5: C 61.11, H 6.21, N
11.25, found: C 61.01, H 6.39, N 11.15.
Principle of script used for image analysis: Maximal fluorescent pixel
intensities are identified for the MTR-acquired image, and the aver-
age intensity for designated objects calculated. Objects with an
average fluorescent MTR intensity, above an assay-specified classifi-
cation of minimal MTR signal, are identified as viable objects. GFP-
positive objects are identified and overlaid with the MTR-positive
objects. The GFP objects with an MTR-positive signal are then eval-
uated for the characteristic of being at least fourfold longer than
they are wide. Objects that are both MTR-positive and GFP-object-
elongated are identified as viable late-stage gametocytes.
6-((3-([1,1’-Biphenyl]-4-yl)ureido)oxy)-N-hydroxyhexanamide
1
(1d): beige solid (0.148 g, 83%): mp: 1418C; H NMR (500.13 MHz,
[D6]DMSO): d=10.37 (s, 1H), 9.50 (s, 1H), 8.80 (s, 1H), 8.69 (s, 1H),
7.68 (d, J=8.3 Hz, 2H), 7.64 (d, J=7.7 Hz, 2H), 7.59 (d, J=8.3 Hz,
2H), 7.44 (t, J=7.6 Hz, 2H), 7.32 (t, J=7.4 Hz, 1H), 3.78 (t, J=
6.7 Hz, 2H), 1.98 (t, J=7.4 Hz, 2H), 1.71–1.60 (m, 2H), 1.58–1.47 (m,
In vitro mammalian cell toxicity assays: Cytotoxicity assays were car-
ried out essentially as previously described.[24] Briefly, neonatal fore-
skin fibroblast (NFF) cells were cultured in RPMI media (Life Tech-
nologies) supplemented with 10% heat-inactivated fetal calf serum
ꢀ 2014 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
ChemMedChem 2014, 9, 665 – 670 669