The Journal of Organic Chemistry
Note
Single-crystal X-ray diffraction data for all samples were collected as
follows: a typical crystal was mounted on a MiTeGen micromount,
using perfluoropolyether oil and cooled rapidly to 100(1) K in a
stream of nitrogen gas, using an Oxford Cryostream cooling device.
Diffraction data were collected (ω-scans) on a Rigaku XtaLAB
Synergy-S diffractometer equipped with a Hypix detector using Cu Kα
radiation (λ = 1.54184 Å). Raw frame data were reduced using
CrysAlisPro. The structures were solved with SHELXT50 and refined
with SHELXL51 using the interface OLEX2.52 All non-hydrogen
atoms were refined anisotropically. The hydrogen atoms were placed
in geometrically calculated positions and refined using a riding model.
A summary of crystallographic data can be found in Tables S5.
General Procedures for Ru-Catalyzed Amidation of 2-
Phenylpyridine with Arylisocyanates. Procedure A. [RuCl2(p-
cymene)]2 (31 mg, 0.05 mmol, 5 mol %) and NaOAc (25 mg, 0.30
mmol, 30 mol %) were added to a Schlenk flask. The flask was then
evacuated and purged with nitrogen three times. The glass stopper
was then replaced with a Suba-Seal under a flush of nitrogen. o-Xylene
(2 mL) was then added by syringe. 2-Phenylpyridine (142 μL, 1.0
mmol) and aryl isocyanate (1.8 mmol) were then added consecutively
by an Eppendorf pipet under a nitrogen flush. The flask was
thoroughly flushed with nitrogen and then sealed. The resultant red
reaction mixture was then transferred to a preheated oil bath (80 °C)
and stirred at that temperature for a further 24 h. After 2 h, the
reaction mixture began to darken. After 24 h, the reaction mixture was
a very dark purple-blue color. The flask was then removed from the oil
bath and permitted to cool to room temperature. The flask was then
open to the air and diluted with dichloromethane (10 mL). The
resultant dark mixture was filtered through a short pad of Celite and
eluted with dichloromethane (20 mL). A small amount of purple
residue was retained at the top of the column, while the eluent was
noticeably green in color. Dichloromethane and o-xylene were then
removed successively by rotary evaporation. The last traces of o-
xylene were removed under a high vacuum, affording a dark tar. The
crude was then analyzed by 1H NMR (CDCl3), ESI-HRMS (MeCN),
and TLC (petroleum ether/EtOAc = 7:3). The residue was purified
by column chromatography on silica (petroleum ether/EtOAc = 7:3
→ 0:10), unless otherwise stated. Amides were isolated as waxy off-
white solids.
report side product formation when developing new organic
reactions.
EXPERIMENTAL SECTION
■
General Synthetic Procedures. Unless noted, all catalytic
reactions were conducted using conventional Schlenk techniques
under an inert atmosphere (N2), utilizing glassware that was oven-
dried (120 °C) and evacuated while hot prior to use, whereas the
workup and isolation of the products from the catalytic reactions were
conducted on the benchtop using standard techniques. 2-Phenyl-
pyridine (1), phenyl isocyanate (2a), 4-tolyl isocyanate (2b), 4-
fluorophenyl isocyanate (2c), silver hexafluoroantimonate(V), o-
xylene (anhydrous, 97%), and 1,2-dichloroethane (anhydrous, 99.8%)
were purchased from Sigma-Aldrich and used without further
purification. NaOAc (anhydrous) was purchased from Chem-Supply
and used as received. Chloroform-d (Cambridge Isotopes) was
deacidified by eluting through a pipet packed with basic alumina prior
to use. All other reagents and materials were obtained from
commercial suppliers and used without further purification.
[RuCl2(p-cymene)]2,45 [Ru(OAc)2(p-cymene)]2,46 Cp*CoI2(CO),47
48
and [Cp*Rh(MeCN)3](SbF6)2 were synthesized according to
published procedures. Analytical TLC was performed on precoated
silica gel plates (0.20 mm thick, F-254, Silicycle, Canada) and
visualized under UV light (254 nm). Flash column chromatography
was carried out using P60 silica gel (40−63 μm, 230−400 mesh,
Silicycle, Canada) as the stationary phase.
Characterization Procedures. NMR spectroscopic character-
izations were recorded on Varian/Agilent or Bruker spectrometers
(see below for MHz) at 298 K unless otherwise stated, in the solvent
1
indicated. Chemical shifts (δ) are referenced to the residual H and
13C resonances of the solvent or TMS and are given in ppm.49
Coupling constants (J) are reported in hertz (Hz). Standard
abbreviations indicating multiplicity were used as follows: m =
multiplet, t = triplet, d = doublet, s = singlet, br = broad. Electrospray
ionization high-resolution mass spectra (ESI-HRMS) were collected
on a Thermo OrbiTrap Fusion Lumos mass spectrometer in the
positive ion mode. Collision-induced dissociation mass spectra (CID-
MS) were collected on a modified Finnigan LTQ linear ion trap mass
spectrometer (Bremen, Germany) in the positive ion mode. All LC−
MS experiments were performed on an Agilent 1200 liquid
chromatography system coupled with an Agilent 6520 quadrupole
time-of-flight (Q-TOF) mass spectrometer. A C18 reversed-phase
Agilent Eclipse XDB column (4.6 × 150 mm, 5 μm) was employed
for compound separation via gradient elution using 0.1% formic acid
in Milli-Q water as mobile phase A and acetonitrile with 0.1% formic
acid as mobile phase B. The injection volume of the sample is 5 μL,
and the flow rate of the solvent is 0.3 μL/min. The following solvent
gradient is used for all reaction analyses [time (min), %B solvent]: [0,
2], [2, 2], [20, 100], [23, 100], [24, 2], [30, 2]. Eluted analytes were
introduced into the gas phase via electrospray ionization (ESI).
Extracted ion chromatograms (EICs) were created by plotting the
integrated ion intensity for a selected m/z value versus retention time.
For a single run, all EICs that correspond to a different m/z value
were merged into one chromatogram. Mass spectral data were
acquired over the range 100−1000 m/z in positive ion mode. A
standard collision energy of 25 V was applied for the data-dependent
collision-induced dissociation experiment (CID). The drying gas flow
rate, nebulizer pressure, capillary, skimmer, and fragmentor voltages
were optimized in the positive ion mode. Analytical RP-HPLC traces
were acquired using an Agilent 1200 HPLC system equipped with an
Alltech Hypersil BDS C18 analytical HPLC column (4.6 × 150 mm, 5
μm) with a flow rate of 1 mL/min and UV absorbance detection at
254 nm. Retention times (tR/min) were recorded using a gradient
elution of 5−100% B in A (A = 0.1% trifluoroacetic acid (TFA), B =
acetonitrile with 0.1% trifluoroacetic acid) over 30 min. Preparative
HPLC was performed on an Agilent 1200 HPLC System using a
Phenomenex Luna 5μ 100 Å C18 column (21.2 × 250 mm) and
eluting with a gradient buffer of A = 0.1% formic acid and B = 0.1%
formic acid in MeCN over 40 min with UV detection at 214 nm.
Procedure B. [RuCl2(p-cymene)]2 (31 mg, 0.05 mmol, 5 mol %),
AgSbF6 (69 mg, 0.20 mmol, 20 mol %), and o-nitrobenzoic acid (50
mg, 0.30 mmol, 30 mol %) were added to a Schlenk flask. The flask
was then evacuated and purged with nitrogen three times. The glass
stopper was then replaced with a Suba-Seal under a flush of nitrogen.
2-Phenylpyridine (142 μL, 1.0 mmol) and phenyl isocyanate (196 μL,
1.8 mmol) were then added consecutively by an Eppendorf pipet
under a nitrogen flush. 1,2-Dichloroethane (2.0 mL) was then added
by syringe. The flask was thoroughly flushed with nitrogen and then
sealed. The resultant red reaction mixture was then transferred to a
preheated oil bath (50 °C) and stirred at that temperature for a
further 24 h. The reaction mixture was then cooled to room
temperature, and an aliquot was taken for HRMS analysis. The
volatiles were then removed under a vacuum. The residue was purified
by column chromatography on silica (petroleum ether/EtOAc = 7:3).
N-Phenyl-2-(pyridin-2-yl)benzamide (3a). Yield: 150 mg, 55%
(Procedure A). Yield: 213 mg, 78% (Procedure B). Rf = 0.1
(petroleum ether/EtOAc = 7:3). HRMS (ESI) m/z: [M + H]+ calcd
1
for C18H15N2O, 275.1179; found, 275.1178. H NMR (600 MHz,
CDCl3): δ 8.86 (br s, 1H), 8.60 (d, J = 4.4 Hz, 1H), 7.76 (d, J = 7.5
Hz, 1H), 7.72 (td, J = 7.8 Hz, J = 1.5 Hz, 1H), 7.51−7.49 (m, 3H),
7.46−7.43 (m, 3H), 7.26−7.23 (m, 3H), 7.06 (t, J = 7.6 Hz, 1H).
13C{1H} NMR (150 MHz, CDCl3): δ 167.8, 158.4, 148.9, 138.4,
138.3, 137.1, 136.4, 130.4, 130.4, 129.3, 129.0, 128.8, 124.3, 124.3,
122.7, 120.1. The NMR data for this compound is consistent with the
previously reported data.17
N-(p-Tolyl)-2-(pyridin-2-yl)benzamide (3b). Yield: 146 mg, 50%
(Procedure A). Rf = 0.1 (petroleum ether/EtOAc = 7:3). HRMS
(ESI) m/z: [M + H]+ calcd for C19H17N2O, 289.1335; found,
1
289.1335. H NMR (600 MHz, CDCl3): δ 8.66 (d, J = 4.7 Hz, 1H),
8.43 (s, 1H), 7.82 (d, J = 7.4 Hz, 1H), 7.73 (td, J = 7.7 Hz, J = 1.7 Hz,
E
J. Org. Chem. XXXX, XXX, XXX−XXX