Journal of Medicinal Chemistry
Article
commercially available and used without further purification. All
solvents were distilled and dried according to standard procedures. 1
as a starting material was obtained from the proprietary medicinal
product Tamiflu (capsules) by several extractions as described in
Supporting Information. Oseltamivir guanidine (7, GS4116) and the
guanidine ester prodrug (10) were synthesized according to literature-
described protocols.22
The mixture was stirred 4 h at ambient temperature and evaporated in
vacuo, and the crude product was purified by column chromatography
(SiO2, CH2Cl2/MeOH, 5−10%). Yield: 1 g (93%) of a colorless oil.
TLC: Rf = 0.39 (CH2Cl2/MeOH, 9:1). 1H NMR (DMSO-d6): δ/ppm
= 0.79 (t, 3J = 7.3 Hz, 3H), 0.84 (t, 3J = 7.1 Hz, 3H), 1.22 (t, 3J = 7.1
Hz, 3H), 1.40 (mc, 4H), 1.86 (s, 3H), 2.10−2.28 (m, 1H), 2.86 (dd, 2J
3
3
= 17.2 Hz, J = 5.2 Hz, 1H), 3.23 (mc, 1H), 3.35 (quint, J = 5.7 Hz,
1H), 3.60 (td, 3J = 8.9, 11.0 Hz, 1H), 4.11 (mc, 1H), 4.16 (q, 3J = 7.1
Hz, 2H), 6.64 (mc, 1H), 6.89 (d, 3J = 7.0 Hz, 1H), 7.95 (d, 3J = 9.1 Hz,
1H). 13C NMR (DMSO-d6): δ/ppm = 8.8, 9.4, 14.0, 23.0, 25.1, 25.6,
30.6, 53.0, 55.1, 60.5, 74.5, 80.7, 116.2, 127.6, 138.4, 165.2, 169.7.
(e) (3R,4R,5S)-Ethyl 4-acetamido-5-(N-(N′-hydroxy)guanidine)-3-
(1-ethylpropoxy)cyclohex-1-enecarboxylate (11). A total of 213 mg
of cyanamide 13 (0.6 mmol) was dissolved in 5 mL of dry 1,4-dioxane,
and 20 mg of hydroxylamine (1 equiv, free base)41 was added. The
mixture was stirred for 30 min at room temperature and evaporated to
dryness. After azeotroping with CH2Cl2 as well as Et2O, a white
powder was obtained. Yield: 222 mg (100%) of a white powder. TLC:
Rf = 0.20 (EtOAc/MeOH, 6:4). 1H NMR (DMSO-d6): δ/ppm = 0.80
(t, 3J = 7.3 Hz, 3H), 0.84 (t, 3J = 7.4 Hz, 3H), 1.24 (t, 3J = 7.1 Hz, 3H),
(a) (3R,4R,5S)-Ethyl 4-acetamido-5-(N-acetimidamido)-3-(1-
ethylpropoxy)cyclohex-1-ene-carboxylate Hydrobromide (8). One
gram (3.2 mmol) of 1 was dissolved in 10 mL of EtOH and cooled to
0 °C. A total of 1.04 g of S-(naphthylmethyl)acetimidobromide (1.1
equiv)31 was added, and the mixture was stirred at room temperature
for 1 h. The mixture was dried in vacuo and resuspended in 80 mL of
water. The solution was washed with Et2O and concentrated to
dryness in vacuo. The product (85%) contained small amounts of
starting material and was further purified by column chromatography
(SiO2, CH2Cl2/MeOH, 5−10%). Yield: 960 mg (71%) of a white
1
powder. TLC: Rf = 0.65 (CH2Cl2/MeOH, 9:1). H NMR (DMSO-
d6): δ/ppm = 0.79 (t, 3J = 7.4 Hz, 3H), 0.85 (t, 3J = 7.4 Hz, 3H), 1.23
3
(t, J = 7.1 Hz, 3H), 1.44 (mc, 4H), 1.83 (s, 3H), 2.11 (s, 3H), 2.33
2
(mc, 1H), 2.67 (dd, 2J = 17.6 Hz, 3J = 4.7 Hz, 1H), 3.42 (quint, 3J = 5.6
Hz, 1H), 3.82 (mc, 1H), 4.05 (mc, 1H), 4.17 (q, 3J = 7.1 Hz, 2H), 4.35
(mc, 1H), 6.69 (mc, 1H), 8.04 (br d, 3J = 9.0 Hz, 1H), 8.63 (br s, 1H),
9.25, 9.35 (2 × br s, 1H). 13C NMR (DMSO-d6): δ/ppm = 8.8, 9.4,
14.0, 18.9, 22.7, 25.2, 25.7, 28.7, 50.9, 53.4, 60.6, 74.1, 81.1, 127.7,
138.0, 164.0, 165.1, 169.7. MS (ESI): m/z = 354 [M + H]+.
1.40 (mc, 4H), 1.83 (s, 3H), 1.99−2.07 (m, 1H), 2.86 (dd, J = 16.7
3
3
Hz, J = 2.5 Hz, 1H), 3.38 (quint, J = 5.5 Hz, 1H), 3.49 (mc, 1H),
3.80 (m, 1H), 4.01 (mc, 1H), 4.14 (q, 3J = 7.1 Hz, 2H), 4.24 (mc, 1H),
4.92 (s, 2H), 6.64 (mc, 1H), 7.72 (br s, 1H), 7.79 (d, 3J = 8.8 Hz, 1H).
13C NMR (DMSO-d6): δ/ppm = 9.0, 9.3, 14.1, 22.9, 25.2, 25.6, 30.9,
49.1, 53.1, 60.4, 75.2, 80.9, 128.8, 137.5, 154.3, 165.7, 169.8. MS (ESI):
m/z = 741 [2 M + H]+, 393 [M + Na]+, 386, 371 [M + H]+. HRMS
(ESI): m/z calc. for C17H30N4O5 [M + H]+: 371.22890, found:
371.22911.
(b) (3R, 4R, 5S)-4-Acetamido-5-(N-acetimidamido)-3-(1-
ethylpropoxy)cyclohex-1-ene-carboxylic Acid (6). Ethyl ester 8
(217 mg, 0.5 mmol) was stirred in 10 mL of MeOH and 1.5 mL of
1 M KOH (in MeOH, 3 equiv) for 1 h at 40 °C. This solution was
diluted with water and the pH was adjusted to 7−8 and concentrated
to dryness. The crude product was purified by flash-chromatography
on a RP18 column (eluent: H2O). Product containing fractions were
Computer Modeling. Protein structures of 5 (pdb 3ti6) and 2 (pdb
3ti5) in complex with H1N1 neuraminidase were retrieved from the
done using UCSF Chimera.42 Hydrogens were added to the protein
structure using MOE and Protonate 3D.43 For docking, the prepared
protein structure pdb 3ti6 and GOLD 5.0 were used with standard
settings and ChemPLP for pose creation.44 In each docking run, 100
poses were created, and water molecules H2O488, H2O510, H2O544,
H2O628, and H2O840 were kept during docking but could be replaced
by the docked ligand.
Biology. Control Compounds. 5 (GS4071) was kindly provided
by Hoffmann-La Roche AG (Basel, Switzerland) and 2 (GG167) by
GlaxoSmithKline (Uxbridge, UK). For antiviral assays, compound
stocks were prepared in H2O and stored at 4 °C (stability of all
oseltamivir derivatives was confirmed as described in detail in
Supporting Information).
1
combined and lyophilized. Yield: 88% of a white powder. H NMR
(D2O, 300 MHz): δ/ppm = 0.84 (t, 3J = 7.4 Hz, 3H), 0.89 (t, 3J = 7.4
Hz, 3H), 1.38−1.63 (m, 4H), 2.03 (s, 3H), 2.23 (s, 3H), 2.43 (mc,
1H), 2.82 (dd, 2J = 17.5 Hz, 3J = 4.8 Hz, 1H), 3.53 (quint, 3J = 5.4 Hz,
1H), 3.93−4.09 (m, 2H), 4.36 (mc, 1H), 6.71 (br s, 1H). 13C NMR
(D2O): δ/ppm =11.2, 11.3, 21.8, 24.7, 27.9, 28.3, 32.0, 53.8, 56.8, 78.0,
86.8, 133.1, 138.4, 167.9, 173.8, 177.3. MS (ESI): m/z = 348 [M +
Na]+, 326 [M + H]+. HRMS (ESI): m/z calc. for C16H27N3O4 [M +
H]+: 326.20743, found: 326.20737.
(c) (3R,4R,5S)-Ethyl 4-acetamido-5-(N-(N′-hydroxy)-
acetimidamido)-3-(1-ethylpropoxy)-cyclohex1-enecarboxylate (9).
A total of 465 mg (1.49 mmol) of 1 and 290 mg of DIPEA (389
μL, 1.5 equiv) were dissolved in 5 mL of CH2Cl2 and cooled to 0 °C.
To this solution, freshly prepared acetohydroximoylchloride (209 mg,
1.5 equiv)32 was added dropwise. The mixture was stirred for 4 h at
room temperature. After addition of 15 mL of water, the mixture was
stirred for another hour. The phases were separated, and the aqueous
phase was extracted with CH2Cl2 (4×) to increase yields. The pooled
organic phases were dried (Na2SO4) and evaporated to dryness. The
product was purified by column chromatography (SiO2, CH2Cl2/
MeOH, 9:1). Yield: 70% of a crystalline colorless solid. TLC: Rf = 0.29
Cells and Viruses. MDCK cells (Friedrich-Loeffler Institute, Riems,
Germany) were grown in Eagle’s minimum essential medium
(EMEM) supplemented with 100 U/mL penicillin and 100 U/mL
streptomycin, 10% fetal bovine serum, and 2 mM L-glutamine. EMEM
medium for virus propagation, titration, antiviral tests of viruses
contained 100 U/mL penicillin and 100 U/mL streptomycin, 2 μg/mL
trypsin, and 0.1% sodium bicarbonate. The seasonal H1N1 A/Berlin/
55/08 (swab sample was published as A/342/2009),33 the H3N2 A/
Sachsen/6/02, A/Berlin/10/04, and A/Rheinland-Pfalz/3911/03 (all
kindly provided by the National Reference Centre of influenza viruses
at the Robert Koch Institute, Berlin, Germany), pandemic H1N1
influenza viruses A/Jena/5258/09, A/Jena/5555/09 (both as pub-
1
3
(CH2Cl2/MeOH, 9:1). H NMR (DMSO-d6): δ/ppm = 0.80 (t, J =
7.4 Hz, 3H), 0.85 (t, 3J = 7.4 Hz, 3H), 1.23 (t, 3J = 7.1 Hz, 3H), 1.43
(mc, 4H), 1.80 (s, 3H), 1.95 (s, 3H), 2.38 (mc, 1H), 2.62 (dd, 2J = 17.4
Hz, 3J = 5.0 Hz, 1H), 3.40 (quint, 3J = 5.6 Hz, 1H), 3.65 (mc, 1H) 3.78
(dd, 2J = 17.4 Hz, 3J = 8.7 Hz, 1H) 4.15 (q, 3J = 7.1 Hz, 2H), 4.19 (mc,
1H), 6.67 (mc, 1H), 6.81 (br d, 3J = 9.1 Hz, 1H), 7.99 (d, 3J = 8.6 Hz,
1H), 9.73 (br s, 1H). 13C NMR (DMSO-d6): δ/ppm = 9.0, 9.4, 13.9,
14.0, 22.7, 25.2, 25.6, 31.3, 50.6, 53.6, 60.4, 74.4, 81.0, 128.4, 137.7,
153.5, 165.5, 169.5. MS (ESI): m/z = 392 [M + Na]+, 370 [M + H]+.
HRMS (ESI): m/z calc. for C18H31N3O5 [M + H]+: 370.23365, found:
370.23379.
lished),33 A/Hamburg/1580/09 (kindly provided by Ralf Durrwald,
̈
IDT Biologica GmbH, Dessau, Germany), and the H3N2 A/
HongKong/68 (strain collection of the Department of Virology and
Antiviral Therapy, Jena University Hospital, Germany) were used in
the present study. Virus titers (TCID50) were determined according to
Reed and Muench.45
Neuraminidase (NA) Inhibition Assay. Inhibition of viral NA was
examined using a chemiluminescence-based assay (NA-star kit, Tropix,
Applied Biosystems, Darmstadt, Germany) as described in the
literature.16,33,34 IC50 values were calculated from at least three
independent experiments.
Cytophatic Effect (CPE) Inhibition Assay. Two-day-old MDCK cell
monolayer without or with test compounds was infected with influenza
(d) (3R,4R,5S)-Ethyl 4-acetamido-5-cyanamido-3-(1-
ethylpropoxy)cyclohex-1-enecarboxylate (12). One gram (3.2
mmol) of 1 was dissolved in 20 mL of EtOH, and 525 mg of
NaOAc (2 equiv) was added. To this solution, 500 mg of cyanogen
bromide (1.5 eq, dissolved 20 mL EtOH) were slowly added dropwise.
H
dx.doi.org/10.1021/jm401492x | J. Med. Chem. XXXX, XXX, XXX−XXX