Journal of Medicinal Chemistry
Article
3-Ethyl-N-((S)-1-phenylethyl)cyclopentanamine (29c). Dia-
stereomeric mixture 29c was prepared (yield 74%) from 3-ethyl-
cyclopentanone and (S)-1-phenylethanamine following a similar
reaction procedure described for 18a. Isomeric mixture: 1H NMR
(500 MHz, CDCl3) δ 7.40−7.09 (m, 5H), 3.81 (p, J = 6.8 Hz, 1H),
3.01−2.82 (m, 1H), 2.20−2.04 (m, 1H), 1.98−1.75 (m, 2H), 1.69−
1.57 (m, 1H), 1.52−1.35 (m, 3H), 1.34 (d, J = 6.8 Hz, 3H), 1.28−1.19
(m, 2H), 0.89−0.80 (m, 3H); 13C NMR (126 MHz, CDCl3) δ 146.03,
128.35, 126.77, 126.75, 126.63, 126.59, 56.98, 56.85, 56.57, 56.50,
56.22, 56.20, 56.14, 45.03, 41.09, 40.54, 40.35, 40.07, 39.87, 39.75,
39.65, 38.94, 38.67, 38.58, 34.24, 33.39, 32.79, 31.93, 31.28, 31.16,
30.08, 29.89, 29.36, 29.24, 29.23, 29.21, 29.16, 28.44, 24.70, 24.65,
24.60, 12.87. MS (ESI): calculated for C15H23N [M + H]+, 218.19;
found, 218.14.
CHCl3) = −6.3, chiral HPLC (Daicel AD-RH, 4.6−150 mm, 5 μm;
70% acetonitrile/30% 0.05 M pH 2 phosphate buffer; 0.4 mL/min;
268 nm) tR = 33.217 min; >99% ee. 46, HPLC purity: 99.3%, [α]25D (c
2, CHCl3) = +6.5, chiral HPLC (Daicel AD-RH, 4.6−150 mm, 5 μm;
70% acetonitrile/30% 0.05 M pH 2 phosphate buffer; 0.4 mL/min;
268 nm) tR = 37.199 min; >99% ee.
1 -( (1R , 2S , 4 S ) - B i c yc lo [ 2 . 2 . 1 ] h e p t an -2 - yl ) - 3 - ( 3 -
chlorophenethyl)pyrimidine-2,4,6(1H,3H,5H)-trione (49) and
1-((1S,2R,4R)-Bicyclo[2.2.1]heptan-2-yl)-3-(3-chlorophenethyl)-
pyrimidine-2,4,6(1H,3H,5H)-trione (51). White powder; mp 155−
1
157 °C; H NMR (500 MHz, CDCl3) δ 7.28−7.11 (m, 4H), 4.69−
4.56 (m, 1H), 4.18−4.03 (m, 2H), 3.64 (dd, J = 9.2, 20.9 Hz, 2H),
2.90 (t, J = 7.8 Hz, 2H), 2.66−2.58 (m, 1H), 2.37 (t, J = 4.5 Hz, 1H),
2.22 (m, 1H), 1.81−1.65 (m, 2H), 1.59−1.50 (m, 1H), 1.47 (m, 1H),
1.45−1.37 (m, 2H), 1.36−1.31 (m, 1H); 13C NMR (126 MHz,
CDCl3) δ 165.90, 164.52, 152.15, 139.84, 134.29, 129.82, 129.09,
127.15, 126.93, 59.65, 42.82, 42.08, 40.90, 37.73, 37.53, 33.66, 29.49,
28.77, 23.86. HRMS (ESI): calculated for C19H21ClN2O3 [M − H]−,
2,3-Dimethyl-N-((S)-1-phenylethyl)cyclopentanamine (29d).
Diastereomeric mixture 29d was prepared (yield 63%) from 2,3-
dimethylcyclopentanone and (S)-1-phenylethanamine following a
1
similar reaction procedure described for 18a. H NMR (500 MHz,
359.1168; found, 359.1172. 49, HPLC purity: 99.0%; [α]25 (c 2,
D
CDCl3) δ 7.49−7.14 (m, 5H), 3.82−3.70 (m, 1H), 3.00 (dt, J = 7.7,
6.6 Hz, 1H), 1.85−1.78 (m, 1H), 1.73 (m, 1H), 1.69−1.53 (m, 4H),
1.35 (d, J = 6.6 Hz, 3H), 0.97 (d, J = 6.9 Hz, 3H), 0.93 (d, J = 6.7 Hz,
3H); 13C NMR (126 MHz, CDCl3) δ 146.62, 128.73, 128.31, 126.72,
58.85, 56.57, 43.21, 40.09, 31.83, 31.14, 24.53, 20.90, 14.02. MS (ESI):
calculated for C15H23N [M + H]+, 218.19; found, 218.28.
CHCl3) = +9.4 chiral HPLC (Daicel OD-RH, 4.6−150 mm, 5 μm;
60% acetonitrile/40% 0.1 M aqueous KPF6; 0.5 mL/min; 268 nm) tR
= 26.400 min, >99% ee. 51, HPLC purity: 99.0%; [α]25D (c 2, CHCl3)
= −9.1, chiral HPLC (Daicel OD-RH, 4.6−150 mm, 5 μm; 60%
acetonitrile/40% 0.1 M aqueous KPF6; 0.5 mL/min; 268 nm) tR
=
22.867 min, 97.2% ee.
General Procedure for 19−22, 24−27, and 30−36. (Method
B). To a solution of an N-(1-phenylethyl)cyclopentylamine (18a,b,
23a,b, 29a−d; 1 mmol) in dry dichloromethane (10 mL) was added
an isocyanate (1 mmol), and the mixture was stirred at room
temperature for 3 h. The solvent was removed by vacuum distillation,
and 95% TFA in water (5 mL) was added to the reaction mixture.
After being stirred for 1 h at room temperature, the reaction mixture
was concentrated under vacuum, redissolved in toluene, and then
dried by vacuum distillation. After the sample was dissolved in dry
dichloromethane (40 mL), malonyl chloride (1.1 mmol) was added
dropwise under vigorous stirring at room temperature for 5 min. The
resulting pale yellow solution was stirred for an additional 1 h and
washed with brine (50 mL). The organic layer was dried over
anhydrous MgSO4 and concentrated at reduced pressure to a small
volume. The resultant reaction mixture was purified with silica gel (24
g) using an Agilent 971-FP purification system to give analytically pure
compounds (50−80% yield).
1 -( (1R , 2S , 4 S ) - B i c yc lo [ 2 . 2 . 1 ] h e p t an -2 - yl ) - 3 - ( 4 -
chlorophenethyl)pyrimidine-2,4,6(1H,3H,5H)-trione (50) and
1-((1S,2R,4R)-Bicyclo[2.2.1]heptan-2-yl)-3-(4-chlorophenethyl)-
pyrimidine-2,4,6(1H,3H,5H)-trione (52). White powder; mp 121−
123 °C; 1H NMR (500 MHz, CDCl3) δ 7.27 (d, J = 8.4 Hz, 2H), 7.18
(d, J = 8.3 Hz, 2H), 4.60 (m, 1H), 4.06 (m, 2H), 3.61 (dd, J = 21.1,
10.1 Hz 2H), 2.87 (t, J = 7.8 Hz, 2H), 2.58 (t, J = 3.8 Hz, 1H), 2.35 (t,
J = 4.5 Hz, 1H), 2.19 (m, 1H), 1.78−1.61 (m, 2H), 1.58−1.47 (m,
1H), 1.47−1.29 (m, 4H); 13C NMR (126 MHz, CDCl3) δ 165.90,
164.53, 152.17, 136.27, 132.56, 130.33, 128.68, 59.64, 42.91, 42.06,
40.92, 37.72, 37.54, 33.35, 29.44, 28.76, 23.82. HRMS (ESI):
calculated for C19H21ClN2O3 [M − H]−, 359.1168; found, 359.1183.
50, HPLC purity: 99.0%; [α]25 (c 2, CHCl3) = +14.5, chiral HPLC
D
(Daicel OD-RH, 4.6−150 mm, 5 μm; 60% acetonitrile/40% 0.1 M
aqueous KPF6; 0.5 mL/min; 268 nm) tR = 25.367 min, >99% ee. 52,
HPLC purity: 100%; [α]25 (c 2, CHCl3) = −14.7, chiral HPLC
D
(Daicel OD-RH, 4.6−150 mm, 5 μm; 60% acetonitrile/40% 0.1 M
aqueous KPF6; 0.5 mL/min; 268 nm) tR = 23.367 min, 97.0% ee.
1-Cyclopentyl-3-(3,5-dichlorophenethyl)pyrimidine-2,4,6-
Spectral Data of the Most Active Compounds. (S)-1-(3-
Chlorophenethyl)-3-(1-cyclohexylethyl)pyrimidine-2,4,6-
(1H,3H,5H)-trione (43) and (R)-1-(3-Chlorophenethyl)-3-(1-
cyclohexylethyl)pyrimidine-2,4,6(1H,3H,5H)-trione (45). Color-
less oil; 1H NMR (500 MHz, CDCl3) δ 7.26−7.07 (m, 4H), 4.50 (m,
1H), 4.09 (m, 2H), 3.60 (s, 2H), 2.90 (m, 2H), 2.04 (m, 1H), 1.87 (m,
1H), 1.76 (m, 1H), 1.66 (m, 2H), 1.36 (d, J = 6.9 Hz, 3H), 1.32−1.06
(m, 4H), 0.86 (m, 2H); 13C NMR (126 MHz, CDCl3) δ 164.85,
164.64, 150.91, 139.75, 134.27, 129.81, 129.13, 127.21, 126.95, 51.35,
42.50, 39.88, 39.20, 33.57, 30.83, 29.83, 26.07, 25.79, 25.71, 16.29.
HRMS (ESI): calculated for C20H25ClN2O3 [M − H]−, 375.1481;
1
(1H,3H,5H)-trione (85). White powder; mp 144−146 °C; H NMR
(500 MHz, CDCl3) δ 7.25 (t, J = 1.9 Hz, 1H), 7.16 (d, J = 1.9 Hz,
2H), 5.15 (m, 1H), 4.09−4.02 (m, 2H), 3.66 (s, 2H), 2.92−2.80 (m,
2H), 1.95 (m, 4H), 1.85 (m, 2H), 1.66−1.52 (m, 2H); 13C NMR (126
MHz, CDCl3) δ 164.69, 164.49, 150.85, 141.12, 135.02, 127.49,
127.05, 54.39, 42.36, 40.11, 33.51, 28.72, 25.57. HRMS (ESI):
calculated for C17H18Cl2N2O3 [M − H]−, 367.0622; found, 367.0637.
HPLC purity: 94.5%.
found, 375.1494. 43, HPLC purity: 99.2%, [α]25 (c 2, CHCl3) =
1-Cyclopentyl-3-(3,4-dichlorophenethyl)pyrimidine-2,4,6-
D
1
(1H,3H,5H)-trione (86). White powder; mp 131−133 °C; H NMR
−6.8, chiral HPLC (Daicel AD-RH, 4.6−150 mm, 5 μm; 70%
acetonitrile/30% 0.05 M pH 2 phosphate buffer; 0.4 mL/min; 268
nm) tR = 30.933 min; >99% ee. 45, HPLC purity: 99.9%, [α]25D (c 2,
CHCl3) = +7.0; chiral HPLC (Daicel AD-RH, 4.6−150 mm, 5 μm;
70% acetonitrile/30% 0.05 M pH 2 phosphate buffer; 0.4 mL/min;
268 nm) tR = 28.017 min; >99% ee.
(500 MHz, CDCl3) δ 7.43−7.32 (m, 2H), 7.12 (d, J = 8.2 Hz, 1H),
5.24−5.08 (m, 1H), 4.13−4.03 (m, 2H), 3.66 (s, 2H), 2.93−2.78 (m,
2H), 2.04−1.90 (m, 4H), 1.89−1.79 (m, 2H), 1.67−1.54 (m, 2H); 13C
NMR (126 MHz, CDCl3) δ 164.71, 164.52, 150.87, 138.03, 132.50,
130.91, 130.85, 130.52, 128.40, 54.36, 42.48, 40.12, 33.18, 28.71,
25.56. HRMS (ESI): calculated for C17H18Cl2N2O3 [M − H]−,
367.0622; found, 367.0637. HPLC purity: 98.0%.
(S)-1-(4-Chlorophenethyl)-3-(1-cyclohexylethyl)pyrimidine-
2,4,6(1H,3H,5H)-trione (44) and (R)-1-(4-Chlorophenethyl)-3-
(1-cyclohexylethyl)pyrimidine-2,4,6(1H,3H,5H)-trione (46). Col-
1-(3,5-Bis(trifluoromethyl)phenethyl)-3-cyclopentylpyrimi-
dine-2,4,6(1H,3H,5H)-trione (87). White powder; mp 163−166 °C;
1H NMR (500 MHz, CDCl3) δ 7.78 (s, 1H), 7.73 (s, 2H), 5.27−4.99
(m, 1H), 4.21−4.04 (m, 2H), 3.66 (s, 2H), 3.17−2.93 (m, 2H), 2.00−
1.75 (m, 6H), 1.66−1.51 (m, 2H); 13C NMR (126 MHz, CDCl3) δ
164.57, 164.54, 150.83, 140.26, 131.84 (q, J = 33.3 Hz), 129.19 (m),
123.23 (q, J = 272.8 Hz), 120.88 (m), 54.38, 42.16, 40.03, 33.66,
28.68, 25.53. HRMS (ESI): calculated for C19H18F6N2O3 [M − H]−,
435.1149; found, 435.1169. HPLC purity: 98.5%.
1
orless oil; H NMR (500 MHz, CDCl3) δ 7.25 (d, J = 8.3 Hz, 2H),
7.16 (d, J = 8.3 Hz, 2H), 4.49 (m, 1H), 4.08 (m, 2H), 3.60 (s, 2H),
2.88 (m, 2H), 2.04 (m, 1H), 1.87 (m, 1H), 1.76 (m, 1H), 1.66 (m,
2H), 1.35 (d, J = 6.9 Hz, 3H), 1.31−1.06 (m, 4H), 0.85 (m, 2H); 13C
NMR (126 MHz, CDCl3) δ 164.85, 164.65, 151.06, 136.19, 132.56,
130.37, 128.66, 51.34, 42.56, 39.88, 39.19, 33.27, 30.81, 29.85, 26.06,
25.79, 25.70, 16.28. HRMS (ESI): calculated for C20H25ClN2O3 [M −
H]−, 375.1148; found, 375.1494. 44, HPLC purity: 97.8%, [α]25D (c 2,
J
dx.doi.org/10.1021/jm4005048 | J. Med. Chem. XXXX, XXX, XXX−XXX