BULLETIN OF THE
Article
Fluorescent Benzamide Drug Targeting HDAC Enzyme
KOREAN CHEMICAL SOCIETY
J = 8.4 Hz, ArH), 8.06–8.01 (m, 3H, ArH), 7.92–7.89 (dd, 1H,
J = 2 and 1.6 Hz, ArH), 7.71–7.63 (m, 3H, ArH), 7.59–7.55
(m, 3H, ArH), 7.21 (s, 1H, ArH), 3.66–3.65 (d, 2H, Ph-
CH2), 2.44 (s, 6H, N(CH3)2), 1.71 (s, 9H, C(CH3)3); 13C
NMR (100 MHz chloroform-d1) 166.026, 154.912,
143.378, 139.081, 137.583, 133.911, 133.285, 132.956,
131.474, 129.663, 129.507, 128.683, 128.527, 127.885,
127.737, 127.350, 126.559, 126.230, 125.967, 125.678,
125.160, 125.061, 124.839, 124.435, 64.166, 45.659(2C),
28.601(3C); LCMS calcd for C31H33N3O3 mol. wt.: 495.61
[M + H]+ m/z 496.17.
2H, J = 8.4 Hz, ArH), 7.83–7.71 (m, 2H, ArH and NH),
7.67–7.39 (m, 11H, ArH), 4.34–4.25 (s, 2H, Ph-CH2),
2.72–2.70 (s, 6H, (NCH3)2); 13C NMR (100 MHz, MeOH-
d4) 132.757, 132.247–132.074(8C), 131.827–131.456(4C),
130.403, 130.098, 129.835 129.168, 128.863, 128.114,
127,892, 127.373, 124.228, 123.644, 61.522(2C), 43.221,
43.081; LCMS calcd for C30H27N3O mol. wt.: 445.55 [M +
H]+ m/z 446.2.
Compound 7–3: 1H NMR (400 MHz, MeOH-d4) δ (ppm)
8.42–8.40 (t, 2H, J = 7.6 Hz, ArH), 8.17–8.08 (m, 6H, ArH
and NH), 8.03–7.90 (m, 9H, ArH), 4.33 (s, 2H, Ph-CH2),
2.81 (s, 6H, N(CH3)2); 13C NMR (100 MHz, MeOH-d4)
144.883, 137.120, 137.120, 134.774, 133.251, 132.930,
132.387, 131.917, 130.897, 129.958, 129.686, 129.431,
128.937, 128.526, 128.451, 128.402, 128.081, 127.357,
127.200, 126.533, 126.204, 126.130, 125.891, 125.825,
125.743, 61.620, 43.138; LCMS calcd for C32H27N3O mol.
wt.: 469.58 [M + H]+ m/z 470.2.
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Compound 6–2: H NMR (400 MHz, chloroform-d1) δ
(ppm) 8.62–8.60 (d, 2H, J = 8.0 Hz, ArH), 8.53–8.51 (d,
2H, J = 8.0 Hz, ArH), 8.28–8.19 (m, 6H, ArH), 8.05–7.90
(m, 7H, ArH and NH), 7.83–7.81 (dd, 1H, J = 8.4 and 8.4
Hz, ArH), 3.84–3.83 (s, 2H, Ph-CH2), 3.22 (s, 6H,
N(CH3)2), 1.95–1.94 (m, 9H, C(CH3)3); 13C NMR (100
MHz, chloroform-d1) 163.199, 160.754, 160.243, 160.062,
159.453, 158.399, 158.094, 157.823, 157.156, 156.851,
156.110, 155.888, 155.369, 152.225, 151.640, 89.508,
71.075, 63.311, 48.830, 42.425; LCMS calcd for
C35H35N3O3 mol. wt.: 545.67 [M + H]+ m/z 546.3.
Results and Discussion
For the synthesis, a Boc-protected 2-nitro-4-bromophenyl
amine compound was used as starting material (Scheme 3).
A Suzuki coupling method was used for attaching a boronic
ester to the R1 position, which, after reduction of the nitro
group to give 3, was then coupled with chlorobenzoyl chloride
to form the benzamide scaffold 4, ready for the attachment of
the fluorescent substituents. The fluorescent materials were
subjected to Suzuki coupling to produce EB2, EB3, and
EB4, respectively (Scheme 1). An N-dimethyl group
was introduced at the R2 position to control the polarity, which
was hydrophilic, after which the amino group of 6 (Scheme 3)
was deprotected by removing the Boc-group to free the impor-
tant site that binds with the active pocket of the HDAC
enzyme.10
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Compound 6–3: H NMR (400 MHz, chloroform-d1) δ
(ppm) 8.25–8.23 (d, 1H, J = 9.6 Hz, ArH), 8.19–8.14 (m,
3H, ArH), 8.08 (s, 2H, NH), 8.06–8.05 (d, 1H, J = 3.6 Hz,
ArH), 8.02–8.00 (m, 2H, ArH), 7.98–7.95 (m, 5H, ArH),
7.51–7.43 (m, 4H, ArH), 4.599–4.568 (d, 2H, Ph-CH2),
2.03 (s, 6H, N(CH3)2), 1.09–1.02 (m, 9H, C(CH3)3); 13C
NMR (100 MHz, chloroform-d1) 154.443, 140.958,
138.776, 136.027, 133.820, 131.137, 130.988, 13.750,
130.667, 130.429, 128.823, 128.387-128.156(6C), 128.008,
127.514, 127.336, 127.292, 127.169, 127.078, 125.798,
125.678, 124.798, 124.567, 124.312, 124.098, 81.413,
60.066, 44.976, 31.606(2C), 29.375–28.000(3C).
General Procedure for Boc Deprotection. Compound 7–1:
A suspension of compound 6 (10 mg, 0.201 mmol) was dis-
solved in dry dichloromethane (0.4 mL), and trifluoroacetic
acid (TFA) (0.59 mg, 0.523 mmol) was added under drop-
wise. The solution was stirred under room temperature. After
stirring for 2 h, the solvent was evaporated, and diethyl
ether was added to the product, and vigorously stirred for
1 h. The solvent was dried in a natural state to obtained yellow-
ish-brown solid product (7 mg, 84.9%) 1H NMR (400 MHz,
MeOH-d4) δ (ppm) 8.23–8.20 (d, 1H, J = 8.4 Hz, ArH),
8.12–8.01 (d, 2H, J = 8.4 Hz, ArH), 8.023–8.00 (d, 1H, J =
9.2 Hz, NH), 7.92–7.79 (m, 6H, ArH), 7.65–7.57 (m, 3H,
ArH), 7.46–7.38 (m, 3H, ArH), 4.39–4.36 (s, 2H, Ph-CH2),
2.86–2.83 (d, 6H, N(CH3)2); 13C NMR (100 MHz, chloro-
form-d1) 162.690, 133.053, 132.214, 129.917, 129.670,
129.250, 129.044, 128.666, 128.757, 127.488, 127.266,
127.143, 126.961, 126.665, 126.525, 126.344, 126.138,
125.998, 125.521, 119.865, 61.645, 61.522, 61.299, 44.760,
43.155; LCMS calcd for C26H25N3O mol. wt.: 395.50 [M +
H]+ m/z 396.1.
Next, the UV and fluorescence spectra of the synthesized
benzamide compounds were recorded. All compounds exhib-
ited a consistent red shift pattern in their UV spectra that
depended on the substituent size (EB1 < EB2 ≤ EB3 < EB4)
(Figure 1(a)). This observation was expected, because the
expansionofthearomatic ringresultsinanincrease intheelec-
tronic conjugation.
To analyze the fluorescent properties of the benzamide
compounds, the highest absorption wavelength of each com-
pound was used as an excitation wavelength. Neither the
unsubstituted benzamide derivative nor the simple phenyl
derivative (data not shown) exhibited any fluorescence. How-
ever, once the more conjugated systems were attached to the
R1 position, all these compounds exhibited fluorescence sig-
nals, starting with the two aromatic rings of naphthalene
and ending with anthracene and pyrene, all of which showed
strong fluorescence from 400 to 450 nm (Figure 1(b)). The
emission wavelength displayed a red shift that increased along
with an increase in the size of the conjugated aromatic system.
To characterize the efficiency of our new polyaromatic fluo-
rescent compounds, we measured the quantum yield (Φ) for
Compound 7–2: 1H NMR (400 MHz, MeOH-d4) δ (ppm)
8.70–8.62 (dd, 2H, J = 8.2 and 8.2 Hz, ArH), 8.04–8.02 (d,
Bull. Korean Chem. Soc. 2015
© 2015 Korean Chemical Society, Seoul & Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
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