F. A. R. Rodrigues et al. / Bioorg. Med. Chem. Lett. 24 (2014) 934–939
935
H
N
N
N
N
Cl
N
NHNH2
N
b
a
N
N
R
2
3
1
Scheme 1. Reagent and conditions (a) N2H4ÁH2O (80%), EtOH, rt, 48 h, 85% (b) ArCHO, EtOH, rt 24 h, 55–96%.
Table 1
Y = Z = H) were the same as that of the 2-OH group in (1:
X,Y = (2,4-(OH)2, Z = H).
Parameters for hydrogen bond and intermolecular interactions (Å, o)
The para-hydroxy group in (1: X,Y = (2,4-(OH)2, Z = H) is also
involved in hydrogen bonding, in this case with the oxygen of
the acetone solvent solvate within the asymmetric unit, see Fig-
ure 1. The arrangement about the C@N bond in (1: X,Y = (2,4-
(OH)2, Z = H) is (E), as was found in (1: X = Y = Z = H) and mono-
halo derivatives, (1: X = 2-, 3-, 4-Br and Cl; Y = Z = H).32 All com-
pounds 1, so far studied, show only small deviations from planarity
and it is clear that there are no significant differences in the molec-
ular conformations adopted by non-active and active compounds
in the solid state.
Electron delocalization in the ANHAN@CHA link between the
quinoxaline and phenyl groups in (1: X,Y = (2,4-(OH)2, Z = H) is
indicated by the bond lengths: C2–N3 = 1.3665(17), N3–
N5 = 1.3729(13), N5–C9 = 1.2895(17) and C9–C10 = 1.4496(16) Å,
respectively. A similar finding was obtained for the other (E)-2-
(2-arylhydrazinyl)quinoxalines recently reported.32
(a) Hydrogen bonds
D–HÁ Á ÁA
D–H
HÁ Á ÁA
1.94
2.54(2)
1.88
2.52
DÁ Á ÁA
D–HÁ Á ÁA
147
165.5(12)
176
172
O1–H1Á Á ÁN5
0.84
0.92(2)
0.84
0.95
0.95
2.6826(13)
3.4323(17)
2.7137(15)
3.4585(18)
3.1836(17)
3.3754(17)
N3–HN3Á Á ÁN4i
O2–H2Á Á ÁO3
C5–H5Á Á ÁN1ii
C15–H15Á Á ÁO1i
C16–H16CÁ Á ÁO2i
2.50
2.51
129
148
0.98
Symmetry operation: i = À1+x,y,z; ii = 1+x,y,z.
(b) C—HÁÁÁCga
C–HÁ Á ÁCga
CÁ Á ÁCg
2.65
Hperp
c
C–HÁ Á ÁCg
140
CÁ Á ÁCg
3.4534(13)
C18–H18BÁ Á ÁCg3i
2.64
2.93
Symmetry operations: i = 1Àx,1Ày,1Àz.
(c) Cg—Cga
Cg(I)Á Á ÁCg(J)a
CgÁ Á ÁCg
4.1140(7)
3.6103(7)
a
b
c
CgIperp
CgJperp
Cg1Á Á ÁCg1i
0
0
36.68
24.45
33.68
24.45
3.2993(4)
3.2864(4)
3.2993(4)
3.2864(4)
The presence of nitrogen and hydroxyl groups in (1: X,Y = (2,4-
(OH)2, Z = H) allows for various intra- and inter-molecular interac-
tions, see Table 2 for details of the symmetry operations and the
geometric parameters. A PLATON analysis34e indicated the presence
of intermolecular N–HÁ Á ÁN and C–HÁ Á ÁO hydrogen bonds as well as
Cg1Á Á ÁCg1ii
Symmetry operations: i = 2Àx,2Ày,Àz; ii = 3Àx,1Ày,Àz.
a
Cg1 and Cg3 are the centroids of the rings defined by [N1,C2,C3,N4,C4A,C8A]
and, [C10–C15], respectively.
p
Á Á Á
p
and C–HÁ Á Á
p interactions, see Table 1. The importance of
weaker intermolecular interactions, such as C–HÁ Á ÁO hydrogen
considered to be a useful exercise as it would indicate any confor-
mational differences between active and non-active compounds.
Suitable crystals of an acetone solvate of (1: X,Y = (2,4-(OH)2,
Z = H), an active compound, were grown from an acetone solution.
The crystal structure of [(1: X,Y = (2,4-(OH)2, Z = H)ÁMe2CO] was
determined from data collected at 100(1) K.33–35 Atomic coordi-
nates, bond lengths, angles and thermal parameters have been
deposited at the Cambridge Crystallographic Data centre, deposi-
tion number 960209. The asymmetric unit of [(1: X,Y = (2,4-
bonds, and C–HÁ Á Á interactions, in crystal structures have
pÁ Á Á
p
p
been well documented.36 Additionally, a theoretical study of
pÁ Á Áp
interactions in the quinoxaline dimer has recently been published37
and has provided a firm understanding of such interactions.
There are two major subsets of intermolecular interactions
present in the crystal of [(1: X,Y = (2,4-(OH)2, Z = H)ÁMe2CO]. The
first subset involves N–HÁ Á ÁN and C–HÁ Á ÁO hydrogen bonds, which
generate columns of linked (1: X,Y = (2,4-(OH)2, Z = H) and acetone
molecules, see Figure 3a. Figure 3b shows the orientation of two of
these columns through the crystallographic cell. The strongest
interaction, the N3–HN3Á Á ÁN4 hydrogen bond, generates C(6)
chains.38 The N3–HN3Á Á ÁN4 hydrogen bond together with
O2–H2Á Á ÁO3 and weaker C5–H5Á Á ÁN1, C15–H15Á Á ÁO1 and C16–
(OH)2, Z = H)ÁMe2CO] consists of
a molecule each of (1:
X = Y = Z = H) and Me2CO. Figure 1 shows the atom arrangements
and numbering scheme of the solvate.
The arrangement of the ortho-hydroxy group in (1: X,Y = (2,4-
(OH)2, Z = H) allows intramolecular hydrogen bonding to occur
with the imino N atom, see Figure 1. The arrangements of the ortho
halogen atoms in (1: X = 2-Br and Cl; Y = Z = H) are different as
shown in Figure 2. Considerable steric hindrance would have re-
sulted if the positions of the halo groups in (1: X = 2-Br and Cl;
H16CÁ Á ÁO2 hydrogen bonds forms
R22(8)R22(16)R33(15).38 The second major subset is formed from
alternating stronger and weaker (pyridine)— (pyridine) stacking
a
series of rings,
p
p
interactions, see Figure 3c. Table 2 contains details of the interac-
tions. There is an additional, but less important, intermolecular
Figure 1. Atom arrangements and numbering scheme for [(1: X,Y = (2,4-(OH)2, Z = H)ÁMe2CO]. Probability ellipsoids are drawn at the 50% level. Hydrogen atoms are drawn as
spheres of arbitrary radius. Hydrogen bonds are drawn as dashed lines.