Benzimidazole-Based MTP Inhibitors
J ournal of Medicinal Chemistry, 2001, Vol. 44, No. 6 855
slurry was filtered and the collected solids were washed five
times with 200-mL portions of cold water. The moist cake was
heated in 500 mL of ethanol to near boiling and then cooled
to room temperature and the solid collected. Drying in vacuo
at 50 °C gave 5 as a yellow solid (80.70 g) in 91% yield: TLC
Rf 0.47 (CH2Cl2); mp 190-192 °C; 1H NMR (DMSO-d6) δ 2.46
(s, 3H), 7.62 (d, 1H), 8.01 (d, 1H); 13C NMR (DMSO-d6) δ 16.98,
125.44, 131.59, 131.88, 141.65, 150.59, 158.21. Anal. Calcd for
C7H5N3O2Se: C, 34.73; H, 2.08; N, 17.36; Se, 32.61. Found:
C, 34.96; H, 1.97; N, 17.35; Se, 32.59.
step gradient of 10% EtOAc/hexane (4 L) to 15% EtOAc/hexane
(2 L) to 20% EtOAc/hexane (4 L). Pure fractions were combined
and evaporated to give 8 (n ) 1) (52.5 g, 71%) as a white
solid: TLC Rf 0.32 (2:8 EtOAc:hexanes); mp 88-92 °C; 1H
NMR (CDCl3) δ 0.83 (m, 2H), 1.68 (m, 2H), 2.42 (m, 2H), 3.21
(t, 2H), 3.68 (m, 2H), 5.36 (t, 1H), 7.36-7.59 (m, 6H), 7.78 (d,
2H); 13C NMR (CDCl3) δ 22.27, 32.70, 32.99, 40.65 (q), 62.17,
120.51, 124.07, 128.21, 128.71, 140.96, 144.88, 173.29.
9-[4-(2,5-Dim eth yl-4-n itr o-1H-ben zim idazol-1-yl)bu tyl]-
N-(2,2,2-tr iflu or oeth yl)-9H-flu or en e-9-ca r boxa m id e (9g,
W ) R ) Me, n ) 1). To a stirred slurry of 1.80 g of 8 (9.41
mmol) in 15 mL of DMF at room temperature under argon
was added 1.75 g (33 mmol) of potassium carbonate. After 1
h, 4.26 g (10.0 mmol) of 7 was added and the reaction stirred
for 86 h. The reaction mixture was quenched with 30 mL of
water. The liquids were decanted away from the formed
gummy solid, which was then washed with water. The semi-
solid residue was triturated with 40 mL of ether. The resulting
granular solid was chilled and filtered. The collected solid cake
was washed with water, transferred to a round-bottom flask
and evaporated from toluene. The dried residual solids were
triturated with hot ethyl acetate and filtered to give 4.02 g of
9g (80%) as a white solid: TLC Rf 0.20 (3:17 Et2O:CH2Cl2);
mp 181-183 °C; 1H NMR (CDCl3) δ 0.77 (m, 2H), 1.52 (m, 2H),
2.25 (s, 3H), 2.41 (m, 2H), 2.47 (s, 3H), 3.71 (m, 2H), 3.82 (t,
2H), 5.91 (t, 1H), 7.00 (d, 1H), 7.11 (d, 1H), 7.26 (t, 2H), 7.32
(t, 2H), 7.46 (d, 2H), 7.62 (d, 2H); 13C NMR (CDCl3) δ 13.20,
17.74, 20.94, 29.32, 35.49, 40.26 (q), 43.37, 61.65, 111.94,
119.94, 123.63 (q), 123.75, 124.00, 124.19, 127.72, 128.23,
134.84, 135.24, 139.61, 140.45, 144.42, 153.64, 172.86.
4-Meth yl-3-n itr o-1,2-ben zen ed ia m in e (6, W ) Me). To
a stirred solution of hydriodic acid (25.0 mL, 57%, 189 mmol,
stabilized with 1.5% hypophosphorous acid) at room temper-
ature in argon was added 5.00 g (20.7 mmol) of 5. The reaction
vessel was placed in an oil bath preheated to 50 °C and the
resulting deep red solution was vigorously stirred for 2 h. After
cooling to room temperature the reaction mixture was poured
into a stirred slurry of 24 g (0.2 mol) of sodium hydrogen sulfite
in 50 mL of water. The resulting light yellow slurry was
treated with an ice-cold solution of sodium hydroxide (7.5 g,
188 mmol) in 50 mL of water. Additional 6 M sodium hydroxide
was added until the aqueous slurry was brought to pH 8. The
resulting deep red slurry was filtered and the filtrate extracted
three times with 200-mL portions of chloroform. The solids
from the filtration were dissolved in 300 mL of chloroform and
washed once with 50 mL of water. The organic extracts were
combined, dried (Na2SO4) and evaporated to give 6 as a deep
red solid (3.04 g) in 88% yield: TLC Rf 0.38 (1:49 Et2O:CH2-
Cl2); mp 132-133 °C; 1H NMR (CDCl3) δ 2.38 (s, 3H), 3.35 (br
s, 2H), 4.92 (br s, 2H), 6.49 (d, 1H), 6.74 (d, 1H); 13C NMR
(CDCl3) δ 20.14, 120.11, 120.27, 125.71, 133.34, 133.46.
9-[4-(2,5-Dim eth yl-4-am in o-1H-ben zim idazol-1-yl)bu tyl]-
N-(2,2,2-tr iflu or oeth yl)-9H-flu or en e-9-ca r boxa m id e (10g,
W ) R ) Me, n ) 1). A stirred slurry of 1.05 g (1.96 mmol) of
9g and 200 mg of 10% palladium-on-charcoal in 40 mL of
ethanol was purged with argon and evacuated three times.
Hydrogen was introduced to the partially evacuated solution
via a balloon. After 14 h, the reaction mixture was purged with
argon and passed through a 0.45-µm nylon filter, washing with
dichloromethane. The filtrate was evaporated and then re-
evaporated twice from dichloromethane to give 10g as a white
2,5-Dim eth yl-4-n itr o-1H-ben zim idazole (7, W ) R ) Me).
To a refluxing solution of 1.00 g (6.00 mmol) of 6 in 27 mL of
ethanol and 7.2 mL of 5 M hydrochloric acid under argon was
added 1.20 g (12.0 mmol) of 2,4-pentanedione over the course
of 5 min. After an additional 60 min at reflux, the reaction
was cooled and partially evaporated to remove ethanol. The
residue was treated with saturated NaHCO3 solution to pH
7, filtered, washed with water and dried in vacuo at40 °C to
give 7 (R ) W ) Me) as a tan solid (1.12 g) in 98% yield: TLC
1
1
Rf 0.20 (EtOAc); mp 232-234 °C; H NMR (CDCl3) δ 2.70 (s,
foam (0.958 g) in 99% yield: TLC Rf 0.13 (EtOAc); H NMR
3H), 2.83 (s, 3H), 7.19 (d, 1H), 7.84, (d, 1H); 13C NMR (CDCl3)
(CDCl3) δ 0.80 (m, 2H), 1.53 (m, 2H), 2.19 (s, 3H), 2.27 (s, 3H),
2.42 (m, 2H), 3.71 (m, 4H), 4.06 (br s, 2H), 5.66 (t, 1H), 6.40
(d, 1H), 6.82 (d, 1H), 7.40 (m, 4H), 7.48 (d, 2H), 7.69 (d, 2H);
13C NMR (CDCl3) δ 13.31, 16.41, 21.27, 29.46, 35.77, 40.49 (q),
43.32, 62.00, 98.31, 112.79, 120.30, 123.72 (q), 124.05, 124.48,
128.04, 128.54, 131.27, 133.77, 135.30, 140.76, 144.75, 148.62,
173.11.
δ 15.08, 22.13, 97.13, 104.91, 125.34, 126.26, 131.41, 152.68.
9-(4-Br om obu tyl)-N-(2,2,2-tr iflu or oeth yl)-9H-flu or en e-
9-ca r b oxa m id e (8, n ) 1). To a solution of 9-fluorene-
carboxylic acid (50 g, 240 mmol) in THF (1200 mL) at 0 °C
was added dropwise a solution of n-butyllithium (2.5 M, 211
mL, 530 mmol) in THF. The yellow reaction was stirred at 0
°C for 1 h, then 1,4-dibromobutane (31.3 mL, 260 mmol) was
added dropwise over 30 min. The reaction was stirred at 0 °C
for 30 min, then warmed to room temperature for 30 h. The
reaction was extracted with water (3 × 750 mL). The combined
aqueous layers were extracted with ethyl ether (800 mL). The
aqueous layer was made acidic with HCl solution (1 N, 500
mL), then extracted with dichloromethane (3 × 750 mL). The
combined organic layers were dried over MgSO4. Evaporation
gave the corresponding C-9 alkylated acid (71 g, 85%) as a
white solid. To a solution of the intermediate acid (60 g, 173
mmol) and DMF (100 µL) in CH2Cl2 (600 mL) under argon at
0 °C was added oxalyl chloride (104 mL, 2.0 M in CH2Cl2, 208
mmol) dropwise. The reaction was stirred at 0 °C for 10 min,
then warmed to room temperature and stirred for 1.5 h. The
reaction was concentrated in vacuo to give the crude acid
chloride as a yellow oil. To a suspension of 2,2,2-trifluoroethyl-
amine hydrochloride (25.9 g, 191 mmol) in CH2Cl2 (500 mL)
at 0 °C under argon was added triethylamine (73 mL, 521
mmol) followed by dropwise addition of a solution of the crude
acid chloride in CH2Cl2 (15 mL). The reaction was stirred at
0 °C for 1 h, diluted with CH2Cl2 (500 mL), and washed with
water (2 × 300 mL), 1 N HCl (2 × 300 mL), saturated NaHCO3
(2 × 300 mL), and brine (2 × 300 mL), then dried over MgSO4.
Evaporation gave 80 g of a oil which was purified by flash
chromatography on silica gel (2.5 kg). The crude product was
loaded in a mixture of CH2Cl2 and hexane, and eluted with a
9-[4-[2,5-Dim eth yl-4-[[[4′-(tr iflu or om eth yl)[1,1′-bip h en -
yl]-2-yl]ca r bon yl]a m in o]-1H-ben zim id a zol-1-yl]bu tyl]-N-
(2,2,2-t r iflu or oet h yl)-9H -flu or en e-9-ca r b oxa m id e (3g).
To a slurry of 1.72 g (6.47 mmol) of 4′-(trifluoromethyl)-2-
biphenylcarboxylic acid (11, Z ) OH), in 15 mL of dichloro-
methane at room temperature was added 0.85 mL (9.74 mmol)
of oxalyl chloride followed by 75 µL of DMF. After 1 h, the
resulting solution was evaporated and re-evaporated from
dichloromethane. The residue was dissolved in 10 mL of
dichloromethane and the solution was added dropwise to a
solution of 3.21 g (6.34 mmol) of 10g and 1.00 mL (7.17 mmol)
of triethylamine in 15 mL of dichloromethane at room tem-
perature. After 90 min, the reaction mixture was diluted with
100 mL of ethyl acetate and washed once with saturated
sodium bicarbonate solution. The organic phase was dried
(MgSO4) and evaporated. Purification by flash chromatography
on silica gel (5 × 25-cm column, ethyl acetate) gave, after
recrystallization from dichloromethane/hexanes, 3g as a white
crystalline solid (3.86 g) in 81% yield: TLC Rf 0.34 (EtOAc);
mp 127-129 °C; 1H NMR (CDCl3) δ 0.81 (m, 2H), 1.56 (m, 2H),
2.26 (s, 3H), 2.36 (s, 3H), 2.42 (m, 2H), 3.69 (dq, 2H), 3.81 (t,
2H), 5.36 (t, 1H), 6.89 (d, 1H), 6.99 (d, 1H), 7.35 (m, 1H), 7.41
(m, 2H), 7.44 (m, 2H), 7.49 (d, 4H), 7.53 (dd, 1H), 7.59 (d, 1H),
7.69 (t, 3H), 7.75 (d, 2H), 7.85 (dd, 1H); 13C NMR (CDCl3) δ
13.53, 18.43, 21.35, 29.61, 35.76, 40.57 (q), 43.56, 62.02, 107.43,
120.44, 123.72 (d) 124.77, 124.92 (q), 124.99 (d) 125.24, 127.45,