A New Cyclic Pseudopeptide
J . Org. Chem., Vol. 64, No. 26, 1999 9485
PyCloP (1.2 equiv, 2.52 mmol, 1.06 g) are dissolved in CH2Cl2
(20 mL/mmol). At room temperature, DIEA (3.4 equiv, 7.14
mmol, 1.24 mL) is added dropwise, and the reaction mixture
is stirred overnight. Afterward, the solvent is evaporated in
vacuo, and the product is isolated chromatographically (ethyl
acetate) from the residue. The product is triturated with
hexane to afford a white solid: yield 1.26 g (94%); mp 133 °C
resulting material is dissolved in a small amount of DMF and
further purified by using a RP-8 column.
cyclo[(L)P r o-AB]3 (2). For the RP-8 column, initially 1:10
1,4-dioxane/H2O is used as eluent. Gradually it is changed to
1:5 1,4-dioxane/H2O and then to 1:2.5 1,4-dioxane/H2O, with
which the pure product is eluted. The product is recrystallized
from methanol: yield 43%; mp >250 °C (softening from 243
(softening from 105 °C); [R]25 ) -106.0 (c ) 2, methanol); 1H
°C); [R]25 ) -66.8 (c ) 2, methanol); 1H NMR (300 MHz,
D
D
NMR (300 MHz, DMSO-d6, 100 °C, TMS) δ 1.34 (s, 9H), 1.90
(m, 6H), 2.16 (m, 1H), 2.27 (m, 1H), 3.39 (m, 2H), 3.58 (m,
2H), 4.23 (dd, J ) 8.3/3.8 Hz, 1H), 4.58 (m, 1H), 5.36 (s, 2H),
7.17 (d, J ) 6.8 Hz, 1H), 7.39 (m, b, 7H), 7.64 (d, J ) 7.2 Hz,
1H), 7.67 (td, J ) 7.7/1.3 Hz, 1H), 7.75 (s, b, 1H), 7.87 (d, J )
8.2 Hz, 1H), 8.20 (s, b, 1H), 9.72 (s, 1H), 9.95 (s, 1H). Anal.
Calcd for C36H40N4O7‚H2O (658.7): C, 65.64; H, 6.43; N, 8.50.
Found: C, 65.49; H, 6.46; N, 8.24.
Hexa p ep tid es. A dipeptide is deprotected at the terminal
amino group according to method A. An equivalent amount of
a tetrapeptide is hydrogenated. Both components as well as
TBTU (1.1 equiv) are dissolved in DMF (30 mL/mmol). At room
temperature, DIEA (3.2 equiv) is added dropwise, and stirring
is continued for 2 h. Afterward, the reaction mixture is poured
into water (150 mL/mmol). The pH is adjusted to ca. 4 with 1
N HCl, and the suspension is stirred for another 10 min. The
precipitate is filtered off, washed with water, and dried.
According to TLC, the product is usually obtained in high
purity by this procedure and can be used for the following step
without further purification. A small amount is purified
chromatographically (1:15 methanol/CH2Cl2) for characteriza-
tion.
BOC-[(L)P r o-AB]3-OBn : yield 92%; mp 186 °C (softening
from 147 °C); [R]25D ) -144.8 (c ) 2, methanol); 1H NMR (300
MHz, DMSO-d6, 100 °C, TMS) δ 1.34 (s, 9H), 1.93 (m, 9H),
2.39 (m, 3H), 3.38 (m, 2H), 3.57 (m, 4H), 4.23 (dd, J ) 8.3/3.7
Hz, 1H), 4.59 (m, 2H), 5.36 (s, 2H), 7.17 (d, J ) 6.6 Hz, 2H),
7.43 (m, b, 8H), 7.65 (m, 3H), 7.76 (s, b, 2H), 7.86 (d, J ) 7.7
Hz, 1H), 8.21 (s, b, 1H), 9.73 (s, 1H), 9.83 (s, 1H), 9.95 (s, 1H).
Anal. Calcd for C48H52N6O9‚H2O (875.0): C, 65.89; H, 6.22; N,
9.60. Found: C, 65.88; H, 6.15; N, 9.51.
DMSO-d6, 25 °C, TMS) δ 1.82-2.03 (m, 9H), 2.28 (m, 3H), 3.39
(m, 3H), 3.46 (m, 3H), 4.64 (dd, J ) 8.2/3.6 Hz, 3H), 7.11 (d, J
) 7.5 Hz, 3H), 7.22 (d, J ) 8.1 Hz, 3H), 7.38 (t, J ) 7.9 Hz,
3H), 8.38 (s, 3H), 10.31 (s, 3H); 13C NMR (75 MHz, DMSO-d6,
25 °C, TMS) δ 24.5 C(γ), 29.4 C(â), 49.3, 59.8, 118.1/118.2,
119.5/119.6, 120.4, 128.5, 138.1, 138.8/138.9, 168.7, 170.2/
170.3. Anal. Calcd for C36H36N6O6‚2H2O (684.7): C, 63.15; H,
5.89; N, 12.27. Found: C, 63.44; H, 5.86; N, 12.22. CI-MS (NH3)
[m/z (relative intensity)]: 666 (100) [M + NH4+], 649 (2) [M +
H+].
Cr ystal Str u ctu r e An alysis of2.28 Data: C39H48N6O9‚(CH4O)3
Mr ) 744.83, colorless prism, crystallized from methanol,
crystal size 0.24 × 0.36 × 0.40 mm, a ) 8.490(1) Å, b ) 19.624-
(1) Å, c ) 22.681(2) Å, V ) 3779.0(5) Å3, T ) 100 K,
orthorhombic, space group P212121 (No. 19), Z ) 4, Dc ) 1.31
g cm-3, µ ) 0.09 mm-1; Siemens SMART diffractometer, Mo
KR X-radiation, λ ) 0.710 73 Å, 42307 measured reflections,
analytical absorption correction (Tmin ) 0.964 96, Tmax 0.986 52),
14 253 unique (θmax ) 33.9°), 9608 (gt) with I > 2.0σ(Fo2). The
structure was solved by direct methods29 and refined by full-
matrix least squares30 on F2 for all data with Chebyshev
weights, with R ) 0.052 (gt), Rw ) 0.123 (all data), 514
parameters, S ) 0.979, H atoms riding, disordered methylene
group [0.66(1):0.34(1)], max shift/error 0.001, and residual Fmax
) 0.362 e Å-3
.
Cr ysta l Str u ctu r e An a lysis of 2‚N-Meth ylqu in u clid -
in iu m Iod id e.28 Data: C36H36N6O6[I]-[C8H16N]+‚CDCl3, Mr )
1022.19, colorless prism, crystallized from toluene/deuterio-
chloroform, crystal size 0.11 × 0.14 × 0.24 mm, a ) 13.7350-
(2) Å, b ) 14.7780(2) Å, c ) 22.3104(3) Å, V ) 4528.5(1) Å3, T
) 100 K, orthorhombic, space group P212121 (No. 19), Z ) 4,
Dc ) 1.50 g cm-3, µ ) 0.94 mm-1, Nonius KappaCCD diffrac-
tometer, Mo KR X-radiation, λ ) 0.710 73 Å, 41 057 measured
reflections, analytical absorption correction (Tmin ) 0.827 23,
Tmax ) 0.922 37), 9888 unique (θmax ) 27.5°), 7241 (gt) with I
> 2.0σ(Fo2). The structure was solved by direct methods29 and
refined by full-matrix least squares30 on F2 for all data with
Chebyshev weights, with R ) 0.056 (gt), Rw ) 0.158 (all data),
559 parameters, S ) 1.04, H atoms riding, absolute configu-
ration determined [Flack parameter -0.03(2)], max shift/error
0.001, and residual Fmax ) 2.317 e Å-3 (1.615 Å from Cl1).
cyclo[(L)Glu (OiP r )-AB-[(L)P r o-AB]2] (3). For the RP-8
column, initially 1:2 MeOH/H2O is used as eluent. Gradually
it is changed to 1:1 MeOH/H2O and then to 2:1 MeOH/H2O,
with which the pure product is eluted. In case it is not obtained
white after this column, another one on silica gel can be carried
BOC-(L)Glu (OiP r )-AB-[(L)P r o-AB]2-OBn : yield 92%; mp
136 °C (softening from 127 °C); [R]25 ) -76.1 (c ) 2,
D
methanol); 1H NMR (300 MHz, DMSO-d6, 100 °C, TMS) δ 1.16
(d, J ) 6.2 Hz, 6H), 1.34 (s, 9H), 1.79-2.47 (m, b, 12H), 3.39
(m, 2H), 3.59 (m, 2H), 4.24 (dd, J ) 8.3/3.6 Hz, 1H), 4.64 (m,
2H), 4.88 (sept, J ) 6.3 Hz, 1H), 5.36 (s, 2H), 7.17 (d, J ) 7.2
Hz, 1H), 7.35 (m, b, 8H), 7.58 (dt, J ) 8.0/1.4 Hz, 1H), 7.65 (d,
J ) 8.3 Hz, 1H), 7.69 (dt, J ) 8.2/1.6 Hz, 1H), 7.76 (m, 2H),
7.89 (2 × dd, J ) 8.2/1.1, 1H), 8.02 (s, 1H), 8.81 (d, J ) 7.4
Hz, 1H), 8.24 (t, J ) 1.8 Hz, 1H), 9.73 (s, 1H), 9.85 (s, 1H),
10.01 (s, 1H). Anal. Calcd for C51H58N6O11‚H2O (949.1): C,
64.54; H, 6.37; N, 8.86. Found: C, 64.50; H, 6.42; N, 8.94.
BOC-[(L)Glu (OiP r )-AB]2-(L)P r o-AB-OBn : yield 94%; mp
1
108-113 °C; [R]25 ) -56.1 (c ) 2, methanol); H NMR (300
D
MHz, DMSO-d6, 100 °C, TMS) δ 1.17 (m, 12H), 1.39 (s, 9H),
1.86-2.44 (m, b, 12H), 3.60 (m, 2H), 4.14 (m, 1H), 4.64 (m,
2H), 4.89 (sept, J ) 6.3 Hz, 2H), 5.35 (s, 2H), 6.61 (d, J ) 7.6
Hz, 1H), 7.18 (d, J ) 8.2 Hz, 1H), 7.39 (m, b, 8H), 7.59 (dt, J
) 8.0/1.2 Hz, 1H), 7.65 (m, 2H), 7.78 (m, 2H), 7.86 (d, J ) 7.9
Hz, 1H), 8.01 (t, J ) 1.7 Hz, 1H), 8.20 (m, 2H), 9.76 (s, 1H),
out with acetone as eluent: yield 34%; 206-214 °C; [R]25
)
D
-33.0 (c ) 2, methanol); 1H NMR (300 MHz, DMSO-d6, 25
°C, TMS) δ 1.15 + 1.16 (2 × d, J ) 6.3 Hz, 6H), 1.85-2.49 (m,
b, 12H), 3.51 (m, 4H), 4.67 (m, 3H), 4.86 (sept, J ) 6.2 Hz,
1H), 7.12 (d, J ) 7.6 Hz, 1H), 7.20 (m, 2H), 7.40 (m, b, 4H),
7.50 (m, 2H), 8.04 (t, 1H), 8.41 (t, 1H), 8.73 (t, 1H), 8.46 (d, J
) 7.9 Hz, 1H), 10.28 (s, 1H), 10.33 (s, 1H), 10.35 (s, 1H); 13C
NMR (75 MHz, DMSO-d6, 25 °C, TMS) δ 21.5, 24.4, 24.6, 26.6,
29.3, 29.4, 30.5, 49.3, 49.4, 53.1, 59.7, 60.1, 67.1, 117.9, 118.0,
119.2, 119.6, 120.5, 120.7, 121.5, 122.6, 128.5, 128.7, 135.7,
137.8, 137.9, 138.4, 138.8, 139.1, 166.9, 168.6, 168.7, 169.9,
9.90 (s, 1H), 9.96 (s, 1H). Anal. Calcd for
C54H64N6O13
(1005.1): C, 64.53; H, 6.42; N, 8.36. Found: C, 64.38; H, 6.64;
N, 8.37.
Cyclop ep tid es. The linear hexapeptides are first hydro-
genated. Afterward, they are deprotected at the terminal
amino group according to method B. For cyclization, a com-
pletely deprotected hexapeptide is dissolved in DMF (100 mL/
mmol), and DIEA (3.2 equiv) is added. The resulting mixture
is heated to 80 °C, and a solution of TBTU (1.1 equiv) in DMF
(20 mL) is added dropwise. Stirring is continued for 2 h at 80
°C. The solvent is then evaporated in vacuo. The residue is
stirred with diethyl ether overnight (2) or triturated with water
(3, 4). The crude product is filtered off, dried, and purified
chromatographically. At first, an initial purification step is
carried out using a silica gel column (10:1 CH2Cl2/MeOH). The
(28) The crystallographic data (without structure factors) for 2 and
2‚N-methylquinuclidinium iodide have been deposited as supplemen-
tary publications CCDC-126020 and CCDC-126021 at the Cambridge
Crystallographic Data Centre. Copies of the data can be obtained from
the following: The Director, CCDC, 12 Union Road, Cambridge CB2
1EZ, U.K. (Telefax +44-1223/336-033. E-mail: deposit@ccdc.cam.ac.uk.)
(29) Sheldrick, G. M. Acta Crystallogr., Sect. A 1990, A46, 467-
473.
(30) Sheldrick, G. M. SHELXL-97, Program for Crystal Structure
Refinement, Universita¨t Go¨ttingen, 1997.