Application of cyanuric chloride-based six new CDRs
Preparation of stock solutions
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Yield: 92%; color: white; UV (nm, in MeCN): 231
(kmax); IR (KBr): 3,419, 2,972, 1,698, 1,639, 1,620, 1,573,
1,479, 1,376, 1,218, 1,134, 1,046, 814, 618 cm-1; 1H NMR
(DMSO-d6): d 1.96–2.04 (m, 2H, –CH2–), 2.03 (s, 3H, –S–
CH3), 2.46–2.51 (m, 2H, –CH2–S), 4.37–4.43 (m, 1H,
–CH–N), 8.56–8.68 (dd, 1H, –NH). Anal. calcd for
C8H10Cl2N4O2S: C, 32.33%; H, 3.39%; N, 18.85%. Found:
C, 32.34%; H, 3.40%; N, 18.88%.
Stock solutions of all racemic and chirally pure amino
acids (100 mM) were prepared in 1 M HCl for derivati-
zation reactions. Solutions of DCT and MCT reagents
(10 mM) were prepared in acetonitrile and dimethyl sulf-
oxide (DMSO), respectively. Stock solutions of NaHCO3
(1 M) and HCl (1 M) were prepared in purified water. All
solutions were filtered through a 0.45 lm filter prior to use.
N-(4-Chloro-6-methoxy-[1,3,5]triazine-2-yl)-L-methionine
amide (CDR 9)
Synthesis of chiral derivatizing reagents
Three sets of CDRs (sets A–C) were synthesized (Fig. 1).
Set A consisting of five DCT reagents having amino acids
as chiral auxiliaries (CDR 1–5) was synthesized by
nucleophilic substitution of one of the chlorine atoms in
CC with amino acids, namely, L-Leu, D-Phg, L-Val, L-Met
and L-Ala, respectively. Set B consisting of five DCT
reagents having amino acid amides as chiral auxiliaries
(CDR 6–10) was synthesized by nucleophilic substitution
of one of the chlorine atoms in CC with amino acid amides,
namely, L-Leu-NH2, D-Phg-NH2, L-Val-NH2, L-Met-NH2
and L-Ala-NH2, respectively.
Yield: 93%; color: white; UV (nm, in MeCN): 232 (kmax);
IR (KBr): 3,422, 2,970, 1,694, 1,635, 1,616, 1,578, 1,475,
1,371, 1,219, 1,136, 1,045, 816, 620 cm-1 1H NMR
;
(DMSO-d6): d 1.99–2.03 (m, 2H, –CH2–), 2.05 (s, 3H, –S–
CH3), 2.47–2.52 (m, 2H, –CH2–S), 4.38–4.41 (m, 1H,
–CH–N), 7.11 (s, 1H, –CONH2), 7.48 (s, 1H, –CONH2),
8.57–8.69 (dd, 1H, –NH). Anal. calcd for C8H11Cl2N5OS:
C, 32.44%; H, 3.74%; N, 23.65%. Found: C, 32.46%; H,
3.75%; N, 23.68%.
MW-assisted synthesis of diastereomers
Set C consisted of six MCT reagents (CDR 11–16) having
amino acid amides as chiral auxiliaries. Five reagents of this
set (CDR 11–15) were synthesized by nucleophilic substi-
tution of one of the chlorine atoms in 6-methoxy derivative
of CC with amino acid amides, namely, L-Leu-NH2, D-Phg-
NH2, L-Val-NH2, L-Met-NH2 and L-Ala-NH2, respectively.
CDR 16 was obtained by substitution of two chlorine atoms
in CC with L-Val-NH2 and L-Phe-NH2, respectively. Syn-
thesis, characterization and determination of enantiomeric
purity of the reagents were carried out as per literature
(Bhushan and Dixit 2010b; Bhushan and Kumar 2008;
Bhushan and Martens 2010). However, representative syn-
thetic procedure for CDR 4 and characterization data for
newly synthesized reagents (CDR 4 and 9) are given below.
The diastereomers of DL-amino acids were synthesized
under MW irradiation. Reaction conditions were investi-
gated using MW irradiation at 75–90% power in a time
range of 50–100 s, one- to fivefold molar ratio of CDRs
and pH range of 8–10 maintained by 1 M NaHCO3. For
quantitative yield, reactions of representative racemic
amino acids, leucine (aliphatic) and phenylalanine (aro-
matic) were optimized with CDR 1 and CDR 11 as rep-
resentatives of DCT and MCT reagents, respectively. The
optimized conditions for derivatization were pH around
8.0, twofold molar excess of CDRs, and MW irradiation of
60 and 90 s at 85% power (of 800 W) using DCT and MCT
reagents, respectively. The diastereomers of all the analytes
were also synthesized by conventional heating for 3 h at
30ꢁC using DCT reagents, and 1 h at 80ꢁC using MCT
reagents, as per literature report (Bhushan and Kumar
2008) for comparison in the present study. A 10 lL volume
of the solution, containing diastereomers, was diluted 10
times with MeCN, and 20 lL of it was injected onto the
column.
N-(4,6-Dichloro-[1,3,5]triazine-2-yl)-L-methionine
(CDR 4)
L-Methionine (746 mg, 5 mmol) was dissolved in 10 mL
of Na2CO3 solution (1 M) and maintained at 0–5ꢁC. Ace-
tone (50 mL) was added to the solution and allowed to
stand for temperature equilibration (20ꢁC). A solution of
CC (922 mg, 5 mmol) in acetone (30 mL) was added with
vigorous stirring. The reaction mixture was then stirred at
20ꢁC for 1 h and water (30 mL) was added and acetone
was removed under reduced pressure. The product began to
crystallize as acetone was removed. The precipitate was
filtered and washed with ice cold water. The filtrate was
extracted with chloroform and evaporated to dryness in
vacuo to give another crop of product.
Literature (Blotny 2006; Ma et al. 2002) reveals that the
substitution pattern of three chlorine atoms of CC can be
controlled by appropriate reaction conditions (temperature,
time, solvent, etc.) and the order of addition of reactants in
the reaction mixture. Substitution of a single chlorine atom
of DCT reagents under optimized derivatization conditions
was confirmed by thin layer chromatography (TLC). The
reaction, e.g. of CDR 1 (that contains L-Leu moiety as
chiral auxiliary) with DL-Val gives the diastereomers of the
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