Published on Web 12/20/2005
Total Synthesis of (()-Jiadifenin and Studies Directed to
Understanding Its SAR: Probing Mechanistic and
Stereochemical Issues in Palladium-Mediated Allylation of
Enolate-Like Structures
David A. Carcache,† Young Shin Cho,† Zihao Hua,† Yuan Tian,‡ Yue-Ming Li,‡ and
Samuel J. Danishefsky*,†,§
Contribution from the Laboratory for Bioorganic Chemistry and Laboratory of Biochemistry and
Pharmacology, Sloan-Kettering Institute for Cancer Research, 1275 York AVenue,
New York, New York 10021, and Department of Chemistry, Columbia UniVersity,
HaVemeyer Hall, 3000 Broadway, New York, New York 10027
Received October 12, 2005; E-mail: s-danishefsky@mskcc.org
Abstract: The total synthesis of jiadifenin has been accomplished. The synthesis allows us to build an
SAR profile which suggests that the jiadifenin skeleton may be less desirable from the standpoint of
nominating a potential drug than that of its prerearrangement precursor. The key steps of the jiadifenin
problem involve the construction of two 1,3-related quaternary carbons. The paper describes how the
stereochemistry was managed in this context. The issue was studied in considerable detail at the level of
a then new allyl transfer reaction arising from a palladium-mediated transfer process of an allyl carbonate.
By use of externally deuterated diallyl carbonate, we could probe, for the first time, the stereochemical
relationship between the inter- and intramolecular versions of this process. The existence of concurrent
inter- and intramolecular allylation reactions was demonstrated by deuteration experiments. While in the
particular case at hand, we find very little difference in stereochemical outcome as one partitions between
the inter- and intramolecular pathways, the techniques employed are applicable to other systems.
Introduction
ment of small molecule nonpeptidyl CNS-permeable neurotro-
phins represents an area of growing interest. In this context,
Naturally occurring polypeptidyl neurotrophic factors, such
as NGF, BDNF, and GDNF, play an important role in mediating
neuronal survival, differentiation, growth, and apoptosis.1
Decreased neurotrophic support has been linked to the progres-
sion of a number of neurodegenerative disorders, including
Alzheimer’s disease, Parkinson’s disease, and Huntington’s
disease. Given their potential therapeutic value, it is not
surprising that neurotrophic factors have been the focus of a
considerable amount of interdisciplinary research. Indeed,
several neurotrophic factors have been evaluated in animal
studies. However, due to issues of poor pharmacokinetics and
bioavailability, the prospects for use of these polypeptides as
clinical agents appears to be limited. Consequently, the develop-
our laboratory has launched a research program directed to the
total synthesis of small molecule natural products that mimic
the effects of naturally occurring neurotrophic factors. To date,
we have synthesized several such compounds, including tricy-
cloillicinone,2 merrilactone A,3 scabronine G methyl ester,4 and
NGA0187.5 Our involvement in this field led us to pursue the
total synthesis of the structurally complex small molecule
neurotrophin, jiadifenin. In this paper, we describe how this goal
was accomplished.6 This program led us to investigate some of
the finer mechanistic and stereochemical issues associated with
the creation of a C-allyl quaternary center by decarboxylative
allylation, starting with an enol carbonate. Finally, the begin-
nings of the mapping of a preliminary SAR profile of neu-
rotrophic activity are described.
† Laboratory for Bioorganic Chemistry, Sloan-Kettering Institute for
Cancer Research.
Fukuyama’s group recently reported the isolation and struc-
tural identification of a novel majucin-type prezizaane, jiadifenin
(Scheme 1, 1), from the Illicium jiadifengpi species of China.7
The known (2S)-hydroxy-3,4-dehydronemajucin (2) had also
‡ Laboratory of Biochemistry and Pharmacology, Sloan-Kettering Institute
for Cancer Research.
§ Columbia University.
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T.; Matsuda, Y.; Vaught, J. L.; Dionne, C. A.; Angeles, T. S.; Glicksman,
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J. AM. CHEM. SOC. 2006, 128, 1016-1022
10.1021/ja056980a CCC: $33.50 © 2006 American Chemical Society