J. Malmström et al. / Bioorg. Med. Chem. Lett. 22 (2012) 5919–5923
5923
6. Cheung, Z. H.; Fu, A. K. Y.; Ip, N. Y. Neuron 2006, 50, 13.
7. Ballatore, C.; Lee, V. M. Y.; Trojanowski, J. Q. Nat. Rev. Neurosci. 2007, 8, 663.
8. Gong, C.-X.; Iqbal, K. Curr. Med. Chem. 2008, 15, 2321.
9. Froelich-Fabre, S.; Bhat, R. V. Drug Discov. Today Dis. Mech. 2004, 1, 391.
10. Cruz, J. C.; Tsai, L.-H. Trends Mol. Med. 2004, 10, 452.
11. Tsai, L.-H.; Lee, M.-S.; Cruz, J. Biochim. Biophys. Acta Proteins and Proteomics
2004, 1697, 137.
N
S
N
S
N
S
c
b
a
H2N
H2N
Br
Br
17
18
16
12. Monaco, E. A. I. Curr. Alzheimer Res. 2004, 1, 33.
13. Shelton, S. B.; Johnson, G. V. W. J. Neurochem. 2004, 88, 1313.
14. Shapiro, G. I. J. Clin. Oncol. 2006, 24, 1770.
15. Zhang, B.; Tan, V. B. C.; Lim, K. M.; Tay, T. E. J. Comput. Aided Mol. Des. 2006, 20,
395.
16. Larsen, S. D.; Stachew, C. F.; Clare, P. M.; Cubbage, J. W.; Leach, K. L. Bioorg. Med.
Chem. Lett. 2003, 13, 3491.
N
S
N
Br
d
e
S
17. Shiradkar, M. R.; Akula, K. C.; Dasari, V.; Baru, V.; Chiningiri, B.; Gandhi, S.;
Kaur, R. Bioorg. Med. Chem. 2007, 15, 2601.
18. Booth, R. J.; Chatterjee, A.; Malone, T. C. WO 2001055148.
19. Helal, C. J.; Kang, Z.; Lucas, J. C.; Gant, T.; Ahlijanian, M. K.; Schachter, J. B.;
Richter, K. E. G.; Cook, J. M.; Menniti, F. S.; Kelly, K.; Mente, S.; Pandit, J.; Hosea,
N. Bioorg. Med. Chem. Lett. 2009, 19, 5703.
19
20
F
F
20. Tarricone, C.; Dhavan, R.; Peng, J.; Areces, L. B.; Tsai, L.-H.; Musacchio, A. Mol.
Cell 2001, 8, 657.
21. Ahn, J. S.; Radhakrishnan, M. L.; Mapelli, M.; Choi, S.; Tidor, B.; Cuny, G. D.;
Musacchio, A.; Yeh, L.-A.; Kosik, K. S. Chem. Biol. 2005, 12, 811.
22. Mapelli, M.; Massimiliano, L.; Crovace, C.; Seeliger, M. A.; Tsai, L.-H.; Meijer, L.;
Musacchio, A. J. Med. Chem. 2005, 48, 671.
SO2NH2
N
S
N
S
f, g, h
S
S
23. Polychronopoulos, P.; Magiatis, P.; Skaltsounis, A.-L.; Myrianthopoulos, V.;
Mikros, E.; Tarricone, A.; Musacchio, A.; Roe, S. M.; Pearl, L.; Leost, M.;
Greengard, P.; Meijer, L. J. Med. Chem. 2004, 47, 935.
21
24. Meijer, L.; Skaltsounis, A.-L.; Magiatis, P.; Polychronopoulos, P.; Knockaert, M.;
Leost, M.; Ryan, X. P.; Vonica, C. A.; Brivanlou, A.; Dajani, R.; Crovace, C.;
Tarricone, C.; Musacchio, A.; Roe, S. M.; Pearl, L.; Greengard, P. Chem. Biol. 2003,
10, 1255.
25. The experimental details are described in the attached Supplementary data.
The coordinates and structure factors for the complex of cdk5 with 4a have
been deposited in the Protein data bank (www.rcsb.org) under accession code
4au8.
26. Zhang, B.; Tan, V. B. C.; Lim, K. M.; Tay, T. E. J. Chem. Inf. Model. 1877, 2007, 47.
27. A panel of 29 kinases screened in the AZ-Dundee collaboration: AMPK, Chk1,
CKII, GSK3b, JNK, Lck, MAPK2/ERK2, MAPKAP-K2, MEK1, MSK1, p70 S6K, PDK1,
Phos kinase, PKA, PKBa, PKCa, PRAK, ROCK-II, SAPK2a, SAPK2b, SAPK3, SAPK4,
SGK, CSK, CDK2/cyclin A, DYRK1A, CK1, MAPKAP-K1a(RSK1), PP2a.
28. Delano, W. L. The PyMOL Molecular Graphis System; Delano Scientific: Palo Alto,
CA, USA, 2002.
15
F
F
Scheme 3. Reagents: (a) Bromine, acetic acid, 26%; (b) Sodium nitrite, H2SO4,
H3PO2, 75%; (c) p-F-Ph-B(OH)2, PdCl2(dppf), aq Na2CO3, toluene/EtOH, 48%; (d) n-
BuLi, CBr4, 39%; (e) Thiophene-3-boronic acid, PdCl2(dppf), aq Na2CO3, toluene/
EtOH, 69%; (f) ClSO3H, CHCl3, 63%; (g) PCl5, POCl3, not isolated; (h) ammonia in
MeOH, 63%.
IC50 value was determined to be 4.36 lM, which gave a 12-fold
drop-off (IC50 in the primary assay: 355 nM).41
In summary, we have developed a novel series of benzothiazol-
2-yl-thiophene-2-sulfonamides as cdk5/p25 inhibitors with mod-
erately potent enzyme activity. A novel kinase pharmacophore
was identified and an X-ray crystallographic structure demon-
strated an unprecedented ligand interaction with the hinge back-
bone via a bridging water molecule. The SAR around the original
hit 4a was explored, and it was found that halogen substituted
benzothiazoles showed increased potency against cdk5 (com-
pounds 4b–c), but decreased selectivity against cdk2. Furthermore,
we demonstrated that substituting the sulfonamide (compounds
4g–o) gave lower potency. Compound 4c also showed moderate
potency in a secondary cell-based assay.
29. Malmström, J.; Viklund, J. WO 2006004507.
30. Jämsä, A.; Bäckström, A.; Gustafsson, E.; Dehvari, N.; Hiller, G.; Cowburn, R. F.;
Vasänge, M. Biochem. Biophys. Res. Commun. 2006, 345, 324.
31. CDK2 assay: The assay experiments were carried out in duplicate with 10
different concentrations of the inhibitors in clear-bottom 384-well microtiter.
Recombinant human Cdk2/Cyklin E (Cyklin dependent kinase 2) (AstraZeneca
Biotech Laboratory) was diluted 1:80 in an assay buffer containing 50 mM
hydroxyethylpiperazineethanesulfonic acid (HEPES), pH 7.35 10 mM
manganese cloride MnCl2 100 M sodium-orto-vanadate Na-orto-Vanadate
1 mM dithioerythritol DTT 100 M sodium fluoride NaF 10 mM sodium-
glycerophosphate. After incubation for 15 min the reaction was initiated by
the addition of 37.5 ng/l of a GST-tagged retinoblastoma peptide substrate
AstraZeneca Biotech Laboratory 0.07 Ci
unlabelled ATP and in an final assay volume of 21
40 min at room temperature each reaction was terminated by the addition of
30 l stop solution containing 10 mM EDTA 84 M ATP and 6.00 mg/ml anti-
c
33P ATP Amersham UK. 0.3 M
l. After incubation for
l
l
GST-tagged streptavidine coated scintillation proximity assay SPA beads
Amersham UK The microtiter plates were centrifuged for 2 min at 200 g and
Acknowledgments
the radioactivity was determined in
MicroBeta Trilux Wallac Finland. The inhibition curves were analysed by
non-linear regression using XL-fit.
a liquid scintillation counter 1450
The authors wish to thank Dr Istvan Macsari for valuable dis-
cussions during the preparation of the manuscript.
32. Evans, D. B.; Rank, K. B.; Sharma, S. K. J. Biochem. Biophys. Methods 2002, 50,
151.
33. Z0-factor is
a characteristic parameter for the quality of the assay itself,
Supplementary data
meaningful in a range of ꢁ1<Z0003E1.
34. Analytical data for compound 4a: 1H NMR (DMSO-d6, 400 MHz) d 8.54 (d, 1H),
8.12 (d, 1H), 8.08 (d, 1H), 7.97 (d, 1H), 7.82 (br s, 2H), 7.50 (t, 1H), 7.42 (t, 1H).
35. McDonald, F. E.; Burova, S. A.; Huffman, L. G. J. Synthesis 2000, 970.
36. Suzuki, N.; Nomoto, T.; Toya, Y.; Kanamori, N.; Yoda, B.; Saeki, A. Biosci.
Biotechnol. Biochem. 1993, 57, 1561.
Supplementary data associated with this article can be found, in
37. Suzuki, N.; Nomoto, T.; Toya, Y.; Yoda, B.; Saeki, A. Chem. Express. 1992, 7, 717.
38. Majo, V. J.; Prabhakaran, J.; Mann, J. J.; Kumar, J. S. D. Tetrahedron Lett. 2003, 44,
8535.
References and notes
39. Jeon, Y. T.; Gluchowski, C. WO 9731636.
40. Boga, C.; Del Vecchio, E.; Forlani, L.; Todesco, P. E. J. Organomet. Chem. 2000,
601, 233.
41. Jämsä, A.; Agerman, K.; Radesäter, A.-C.; Ottervald, J.; Malmström, J.; Hiller, G.;
Liu, G.; Vasänge, M. J. Biomed. Sci. 2009, 16, 55.
1. Dhariwala, F. A.; Rajadhyaksha, M. S. Cell. Mol. Neurobiol. 2008, 28, 351.
2. Dhavan, R.; Tsai, L.-H. Nat. Rev. Mol. Cell Biol. 2001, 2, 749.
3. Camins, A.; Verdaguer, E.; Folch, J.; Canudas, A. M.; Pallas, M. Drug News
Perspect. 2006, 19, 453.
4. Cruz, J. C.; Tsai, L.-H. Curr. Opin. Neurobiol. 2004, 14, 390.
5. Cheung, Z. H.; Ip, N. Y. Neurosci. Lett. 2004, 361, 47.