Bioorganic & Medicinal Chemistry Letters
Discovery and SAR studies of methionine–proline anilides as dengue
virus NS2B-NS3 protease inhibitors
a
b
c
a
d
a
Guo-Chun Zhou a, , Zhibing Weng , Xiaoxia Shao , Fang Liu , Xin Nie , Jinsong Liu , Decai Wang ,
⇑
Chunguang Wang b, Kai Guo a,
⇑
a School of Pharmaceutical Sciences, and College of Biotechnology and Pharmaceutical Engineering, Nanjing University of Technology, Nanjing 211816, PR China
b Institute of Protein Research, Tongji University, Shanghai 200092, PR China
c School of Life Sciences, Lanzhou University, Lanzhou 730000, PR China
d Guangzhou Institute of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou 510530, PR China
a r t i c l e i n f o
a b s t r a c t
Article history:
A series of methionine–proline dipeptide derivatives and their analogues were designed, synthesized and
assayed against the serotype 2 dengue virus NS2B-NS3 protease, and methionine–proline anilides 1 and 2
were found to be the most active DENV 2 NS2B-NS3 competitive inhibitors with Ki values of 4.9 and
Received 15 August 2013
Revised 10 October 2013
Accepted 31 October 2013
Available online 8 November 2013
10.5 lM. The structure and activity relationship and the molecular docking revealed that L-proline, L-
methionine and p-nitroaniline in 1 and 2 are the important characters in blocking the active site of
NS2B-NS3 protease. Our current results suggest that the title dipeptidic scaffold represents a promising
structural core to discover a new class of active NS2B-NS3 competitive inhibitors.
Ó 2013 Elsevier Ltd. All rights reserved.
Keywords:
Dengue virus NS2B-NS3 protease
Methionine–proline anilides
Proline
Methionine
4-Nitroaniline
Dengue viruses (DENVs) are classified as the Flavivirus genus1
and are causative pathogens of mild to severe epidemic diseases
like dengue fever (DF), dengue hemorrhagic fever (DHF), and den-
gue shock syndrome (DSS).2,3 These diseases are transmitted by
Aedes aegypti mosquitoes and are threatening up to 2.5 billion peo-
ple in more than 100 countries in tropical and subtropical regions.
Until now, there is no specific treatment for dengue diseases.4,5
There are four distinctive, but closely related, serotypes of den-
gue viruses named as DENV-1, DENV-2, DENV-3 and DENV-4.
Recovery from infection by one serotype of DENV provides lifelong
immunity against that particular serotype, however, cross-immu-
nity to the other serotypes after recovery is only partial and tempo-
rary, and more dangerously, subsequent infection by any of the
other three serotypes will enhance the risk of developing severe
dengue.5,6 This antibody-dependent enhancement effect (ADE) of
DENVs makes the vaccine development extremely difficult, which
is the major reason for no effective vaccine against DENV/s up to
now.6 Therefore, targeting DENV NS2B-NS3 protease using small
molecule drugs is an urgent and important antiviral therapeutic
treatment.
DENV is an enveloped RNA virus with ꢀ11 kb positive strand
RNA genome encoding a single polypeptide, which is subsequently
processed by the virus-encoded trypsin-like NS2B-NS3 protease to
generate three structural proteins (capsid protein, precursor-
membrane protein, and envelope protein) and seven nonstructural
proteins (NS1, NS2A, NS2B, NS3, NS4A, NS4B, and NS5).7,8 The
184-residue NS3pro is the enzymatic domain with
a serine
protease catalytic triad (His51, Asp75, and Ser135). Optimal
catalytic activity of NS3 depends on the presence of NS2B.9 Since
the NS2B-NS3 protease is essential for the maturation and
pathogenesis of dengue virus, it is considered to be a promising
target for antidengue virus drug development.10,11
Many efforts have been made to develop antidengue virus
NS2B-NS3 agents.10,12 In the light of the fact that the active site
of NS3-NS2B is shallow and prefers to cleave substrates with diba-
sic amino acids in vitro,9 we screened our lab’s chemical library
biased on compounds with multi-substituted and strained ring/s
and varied potential binding sites and some hits were discovered.
Among these hits, two modified dipeptides of methionine–proline
Abbreviations: SAR, structure and activity relationship; NS2B-NS3, nonstructural
protein 2B and 3; DENV, dengue virus; Ki, inhibition constant; TFA, trifluoroacetic
acid; EtOAc, ethyl acetate; DCM, dichloromethylene; EtOH, ethyl alcohol; DMAP, 4-
(N,N0-dimethyl)-aminopyridine; DCC, dicyclohexylcarbodiimide.
⇑
Corresponding authors.
0960-894X/$ - see front matter Ó 2013 Elsevier Ltd. All rights reserved.