LETTER
DNA-Catalyzed Aldol Reaction
2493
Table 3a Aldol Reaction of p-Nitrobenzaldehyde with Aliphatic
(2) (a) Kanan, M. W.; Rozenman, M. M.; Sakurai, K.; Snyder,
T. M.; Liu, D. R. Nature (London) 2004, 431, 545. (b) Li,
X. Y.; Liu, D. R. Angew. Chem. Int. Ed. 2004, 43, 4848; and
references therein. (c) Silverman, A. P.; Kool, E. T. Chem.
Rev. 2006, 106, 3775. (d) Sakurai, K.; Snyder, T. M.; Liu,
D. R. J. Am. Chem. Soc. 2005, 127, 1660. (e) Obika, S.;
Tomizu, M.; Negoro, Y.; Orita, A.; Nakagawa, O.; Imanishi,
T. ChemBioChem 2007, 8, 1924. (f) Oberhuber, M.; Joyce,
G. F. Angew. Chem. Int. Ed. 2005, 44, 7580.
Ketones
OH
O
O
DNA
H2O
O +
O2N
O2N
1
2
Entry
2
Time (d) Product13
syn/antib
Yield
%)c
(
3) (a) Miller, S. J. Nat. Biotechnol. 2004, 22, 1378.
b) Rozenman, M. M.; Liu, D. R. ChemBioChem 2006, 7,
253. (c) Silverman, S. K. Org. Biomol. Chem. 2004, 2,
(
(
O
1
2
6
3a
3b
67:33
62:38
48
60
2701. (d) Gartner, Z. J.; Liu, D. R. J. Am. Chem. Soc. 2001,
123, 6961.
O
3.5
(
4) (a) Roelfes, G.; Feringa, B. L. Angew. Chem. Int. Ed. 2005,
44, 3230. (b) Coquire, D.; Feringa, B. L.; Roelfes, G.
Angew. Chem. Int. Ed. 2007, 46, 9308. (c) Roelfes, G.;
Boersma, A. J.; Feringa, B. L. Chem. Commun. 2006, 635.
HO
3
4
4
4
3c
60:40
50:50
51
36
O
(
2
d) Boersma, A. J.; Feringa, B. L.; Roelfes, G. Org. Lett.
007, 9, 3647. (e) Shibata, N.; Yasui, H.; Nakamura, S.;
Toru, T. Synlett 2007, 1153.
5) Fan, J. M.; Sun, G. J.; Wan, C. F.; Wang, Z. Y.; Li, Y. F.
Chem. Commun. 2008, 3792.
6) Modern Aldol Reactions; Mahrwald, R., Ed.; Wiley-VCH:
Weinheim, 2004.
O
3d
(
(
5
O
O
4
3e
55:45
40
(7) (a) Zotova, N.; Franzke, A.; Armstrong, A.; Blackmond,
D. G. J. Am. Chem. Soc. 2007, 129, 15100. (b) Dipeptide-
catalyzed Aldol reactions can be carried out in water–
organic solvent mixtures; see: Dziedzic, P.; Zou, W.; Háfren,
J.; Córdova, A. Org. Biomol. Chem. 2006, 4, 38. (c) Font,
D.; Jimeno, C.; Pericàs, M. A. Org. Lett. 2006, 8, 4653.
a
The reactions were carried out at 60 °C with 1 (0.5 mmol), 2 (1.0
mmol), 1.5 mL of DMSO, and 1 mL of aq MOPS buffer (c 30 mM).
(d) Fernandez-Lopez, R.; Kofoed, J.; Machuqueiro, M.;
b
c
1
Darbre, T. Eur. J. Org. Chem. 2005, 5268. (e) Chimni,
The ratio was determined by H NMR.
Isolated yield based on the amount of 1.
S. S.; Mahajan, D. Tetrahedron 2005, 61, 5019.
8) (a) List, B.; Lerner, R. A.; Barba, C. F. III J. Am. Chem. Soc.
(
2
000, 122, 2395. (b) Sakthivel, K.; Notz, W.; Bui, T.;
DNA as a catalyst in an early stage during the develop-
ment of life on earth.
Barbas, C. F. III J. Am. Chem. Soc. 2001, 123, 5260.
1
1
(
(
c) Notz, W.; List, B. J. Am. Chem. Soc. 2000, 122, 7386.
d) List, B. J. Am. Chem. Soc. 2000, 122, 9336. (e) Bui, T.;
Barbas, C. F. III Tetrahedron Lett. 2000, 41, 6951.
f) Còrdova, A.; Notz, W.; Zhong, G.; Betancort, J. M.;
Barbas, C. F. III J. Am. Chem. Soc. 2002, 124, 1842.
g) Kumaragurubaran N., Juhl K., Zhuang W., Bøgevig A.,
Jørgensen K. A.; J. Am. Chem. Soc.; 2002, 124: 6254.
(
Supporting Information for this article is available online at
http://www.thieme-connect.com/ejournals/toc/synlett.
(
(
(
h) List B.; J. Am. Chem. Soc.; 2002, 124: 5656.
i) Bøgevig, A.; Juhl, K.; Kumaragurubaran, N.; Zhuang,
Acknowledgment
The authors are grateful to National Natural Science Foundation of
China (20628202).
W.; Jørgensen, K. A. Angew. Chem. Int. Ed. 2002, 41, 1790.
(j) Northrup, A. B.; MacMillan, D. W. C. J. Am. Chem. Soc.
2
002, 124, 6798. (k) Còrdova, A.; Watanabe, S.; Tanaka, F.;
Notz, W.; Barbas, C. F. I. I. I. J. Am. Chem. Soc. 2002, 124,
866. (l) For reviews, see: Chen, J.-R.; Li, X.-Y.; Xing,
References and Notes
1
X.-N.; Xiao, W.-J. J. Org. Chem. 2006, 71, 8198. (m) List,
B. Tetrahedron 2002, 58, 5573. (n) List, B. Synlett 2001,
(
1) (a) Lu, Y.; Liu, J. W. Curr. Opin. Biotechnol. 2006, 17, 580.
b) Roelfes, G. Mol. BioSyst. 2007, 3, 126. (c) Scherer,
(
1
675.
9) (a) Tang, Z.; Marx, A. Angew. Chem. Int. Ed. 2007, 46,
297. (b) Tang, Z.; Goncalves, D. P. N.; Wieland, M.; Marx,
A.; Hartig, J. S. ChemBioChem 2008, 9, 1061.
L. J.; Rossi, J. J. Nat. Biotechnol. 2003, 21, 1457. (d) Liu,
J. W.; Lu, Y. J. Fluoresc. 2004, 14, 343. (e) Lu, Y.; Liu, J.
W. Acc. Chem. Res. 2007, 40, 315. (f) May, J. P.; Ting, R.;
Lermer, L.; Thomas, J. M.; Roupioz, Y.; Perrin, D. M. J. Am.
Chem. Soc. 2004, 126, 4145. (g) Isaka, Y. Curr. Opin. Mol.
Ther. 2007, 9, 132.
(
7
(
(
(
10) Fusz, S.; Eisenführ, A.; Srivatsan, S. G.; Heckel, A.;
Famulok, M. Chem. Biol. 2005, 12, 941.
11) (a) Gilbert, W. Nature (London) 1986, 319, 618. (b) Joyce,
G. F. Nature (London) 2002, 418, 214.
12) Typical Procedure for the Aldol Reaction of
p-Nitrobenzaldehyde with Acetone
To an aq MOPS buffer solution (30 mM, pH = 6.50) was
added DNA (herring sperm or salmon testes DNA 20 mg,
purchased from Sigma). After 10 min, p-nitrobenzaldehyde
(0.5 mmol) in acetone (1.5 mL) was added. After the mixture
Synlett 2008, No. 16, 2491–2494 © Thieme Stuttgart · New York