A. Santillan Jr. et al. / Bioorg. Med. Chem. Lett. 20 (2010) 6226–6230
6229
O
OH
OH
O
OH
Br
Br
a
b
N
X
S
S
S
3
9
40
41
O
O
O
N
c
N
d
N
X
X
S
S
4
3: X = N-i-Pr
4
2
44: X = N-cyc-Bu
Scheme 7. Reagents and conditions: (a) (i) i-butyl chloroformate, Et
piperazine, Mo(CO) , DBU, Hermann’s catalyst, t-Bu PHBF
3
N, THF, 0 °C; (ii) NaBH
, THF, 125 °C, microwave (18–24%); (c) MnO
4
2
, THF:H O (1:1), 0 °C to rt (89% over two steps); (b) N-i-Pr-piperazine or N-cyc-Bu-
6
3
4
2 3 3 2 2
, CHCl , 70 °C (83–95%); (d) piperidine, NaBH(OAc) , CH Cl (53–59%).
The corresponding amido analogs were prepared as seen in
Scheme 8. Amide coupling of the acid 39 with piperidine provided
the desired amide intermediate 45. Amino carbonylation, with
slightly modified conditions from the aforementioned examples,
provided the desired amide analogs 46–47.
The hH binding affinity data for the 3,5-substituted benzothio-
3
phene analogs is summarized in Table 4. In agreement with the in-
dole analogs, the benzothiophene core is seen as a viable phenyl
O
N
R
N
N
N
H
O
2
hH
hH
t1/2 = 3.5 h
F = 100%
2: R = i-Pr
23: R = cyc-Pr
3
K
i
= 2.1 nM
pA = 9.6
hH
hH
3
K
i
= 2.0 nM
2
3
2
3
pA = 9.3
core replacement. The hH
is better (34- to 65-fold) than the corresponding 3-amide analogs
compounds 43–44 vs 46–47) emphasizing the need for a basic
3
affinity of the 3-aminomethyl analogs
t1/2 = 1.9 h
F = 38%
AUC = 3.9 µM*h (po, 10 mpk)
ss = 40 L/kg
CL = 160 mL/min/kg
AUC = 7.4 µM*h (po, 10 mpk)
ss = 8.4 L/kg
CL = 77mL/min/kg
(
V
V
amine at the 3-position and supporting the pharmacophore
hypothesis.
No cross-reactivity with the hERG channel was observed for se-
lect compounds in the indole and benzothiophene series using a
high-throughput astemizole-binding assay.
The encouraging in vitro potencies of the indole analogs
prompted further exploration of the in vivo properties of com-
pounds 22 and 23 in a rat pharmacokinetic model. The results of
these studies are summarized in Figure 3. As seen from the data,
Figure 3. Rat PK profile of compounds 22 and 23.
16
substitution on the piperazine amide can influence the PK profile.
These two indoles display a range of bioavailabilities (F = 38–
100%), volumes of distribution (Vss = 8.4–40 L/kg) and clearance
values (CL = 77–160 mL/min/kg). Possible phospholipidosis due to
these compounds was not examined at this time.
In conclusion, our early efforts toward replacing the phenyl core
with 6,5-bicyclic aromatic ring systems, represented by indole and
benzothiophene, indicated that such changes were well tolerated.
These analogs were efficiently generated and exhibited good to
O
O
OH
N
Br
Br
a
3
excellent hH affinities. Moreover, the indole-based analogs
S
S
showed promising rat PK properties and are suitable for further
optimization. Such additional work will be necessary to better
compare and contrast compounds with monocyclic versus bicyclic
heteroaromatic cores.
3
9
45
O
O
N
b
N
X
References and notes
S
4
6: X = N-i-Pr
7: X = N-cyc-Bu
1.
(a) Gemkow, M. J.; Davenport, A. J.; Harich, S.; Ellenbroek, B. A.; Cesura, A.;
Hallett, D. Drug Discov. Today. 2009, 14, 509; (b) Sander, K.; Kottke, T.; Stark, H.
Biol. Pharm. Bull. 2008, 31(12), 2163; (c) Stocking, E. M.; Letavic, M. A. Curr. Top.
Med. Chem. 2008, 8(11), 988; (d) Letavic, M. A.; Barbier, A. J.; Dvorak, C. A.;
Carruthers, N. I. Prog. Med. Chem. 2006, 44, 181; (e) Arrang, J. M.; Garbarg, M.;
Schwartz, J. C. Neuroscience 1987, 23, 149.
4
Scheme 8. Reagents and conditions: (a) piperidine, EDCI, HOBt, DMF (98%); (b) N-i-
Pr-piperazine or N-cyc-Bu-piperazine, Mo(CO)
30 °C, microwave (34–41%).
6
, Na
2
CO
3
2
, Hermann’s catalyst, H O,
1
2
3
.
.
Arrang, J. M.; Garbarg, M.; Schwartz, J. C. Nature (London, U.K.) 1983, 302, 832.
Ly, K. S.; Letavic, M. A.; Keith, J. M.; Miller, J. M.; Stocking, E. M.; Barbier, A. J.;
Bonaventure, P.; Lord, B.; Jiang, X.; Boggs, J. D.; Dvorak, L.; Miller, K. L.;
Nepomuceno, D.; Wilson, S. J.; Carruthers, N. I. Bioorg. Med. Chem. Lett. 2008, 18,
Table 4
SAR of 3,5-substituted benzothiophene analogs
39.
Y
4.
Apodaca, R.; Dvorak, C. A.; Xiao, W.; Boggs, J. D.; Wilson, S. J.; Lovenberg, T. W.;
Carruthers, N. I. J. Med. Chem. 2003, 46, 3938.
O
N
N
X
5. Dvorak, C. A.; Apodaca, R.; Barbier, A. J.; Berridge, C. W.; Wilson, S. J.; Boggs, J.
D.; Xiao, W.; Lovenberg, T. W.; Carruthers, N. I. J. Med. Chem. 2005, 48, 2229.
3
6. For more information on the evolution of the H R pharmacophore, see:
S
a
Celainire, S.; Wijtmans, M.; Talaga, P.; Leurs, R.; de Esch, I. J. P. Drug Discovery
Today 2005, 10, 1613.
Compds
X
Y
hH
3
K
i
(nM)
43
44
46
47
N-i-Pr
N-cyc-Bu
N-i-Pr
H
H
O
O
2
50 ± 8
15 ± 1
3280 ± 1890
520 ± 220
7. (a) Wager, T. T. U.S. 20060069087.; (b) Nettekovan, M.; Plancher, J.-M.; Richter,
H.; Roche, O.; Taylor, S. U.S. 20080188487.; (c) Pierson, P. D.; Fettes, A.; Freichel,
C.; Gatti-McArthur, S.; Hertel, C.; Huwyler, J.; Mohr, P.; Nakagawa, T.;
Nettekoven, M.; Plancher, J.-M.; Raab, S.; Richter, H.; Roche, O.; Sarmiento, R.
M. R.; Schmitt, M.; Schuler, F.; Takahashi, T.; Taylor, S.; Ullmer, C.; Wiegand, R.
J. Med. Chem. 2009, 52, 3855.
2
N-cyc-Bu
a
See Table 1 for details.