Y. Wang et al.
Bioorganic Chemistry 111 (2021) 104833
′
4
.2.8. N-(2-((2,6-Dimethoxy-4-((3-methyl-[1,1 -biphenyl]-4-yl)methoxy)
sulfoxide (DMSO). Optical density (OD) of formazan concentration was
read at 490 nm and 570 nm with THERMO FISHER Multiskan FC. The
concentrations required to inhibit growth by 50% (IC50) were calculated
with GraphPad Prism 7.
benzyl)amino)ethyl)-5-(2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindolin-5-
yl)pent-4-ynamide (18a)
To a solution of 17 (210 mg, 620 µmol) in DMF (3 mL) was added
1
5a (300 mg, 620 µmol), Pd(PPh
3
)
2
Cl
2
(43.0 mg, 60.0 µmol), CuI (11.0
◦
mg, 60.0 µmol) and DIPEA (1.00 mL). The mixture was stirred at 50 C
under an argon atmosphere for 12 h. Then the mixture was diluted with
EtOAc (15 mL) and washed with saturated NaCl solution (5 mL), dried
4
.5. CCK-8 assay
Skno-1 cells were seeded in a 96-well plate at a density of 8000 cells/
2 4
over Na SO , concentrated under reduced pressure. The residue was
well in 100
pounds, and incubated for 48 h. After for the incubation, each well of the
plate was added in 10 L of CCK-8 solution and incubated for another
μ
L culture medium supplemented with or without com-
purified by column chromatography on silica gel (dichloromethane/
methanol 15:1) to afford compound 18a (310 mg, 66%) as white solid.
◦
μ
M.p. 145.7–147.1 C; IR (KBr): 2925, 2849, 1717, 1636, 1595, 1420,
ꢀ
1
1
4–6 h in the incubator. The absorbance at 450 nm was measured with
THERMO FISHER Multiskan FC. The concentrations required to inhibit
growth by 50% (IC50) were calculated with GraphPad Prism 7.
1
1
377, 1141, 1113, 732, 707 cm . H NMR (400 MHz, CDCl ) δ 7.95 (s,
3
H), 7.76–7.72 (m, 1H), 7.66–7.60 (m, 2H), 7.44–7.26 (m, 9H), 6.19 (d,
J = 1.3 Hz, 2H), 5.06 (s, 3H), 4.16 (d, J = 3.5 Hz, 2H), 3.82 (s, 6H), 3.63
(
d, J = 5.5 Hz, 2H), 2.99 (t, J = 5.4 Hz, 2H), 2.80 (q, J = 7.4 Hz, 5H),
1
3
2
.59 (t, J = 7.0 Hz, 2H), 2.25 (d, J = 1.3 Hz, 3H), 2.16–2.11 (m, 1H).
) δ 171.8, 171.0, 168.0, 166.9, 166.8, 162.4,
60.0, 143.3, 141.9, 137.5, 134.7, 132.0, 130.8, 130.7, 130.0, 129.5,
C
4
.6. Cell membrane protein and cytoplasmic protein extraction
NMR (100 MHz, CDCl
3
1
1
4
1
The protein was extracted according to the operating steps of the
28.5, 128.3, 127.1, 126.7, 125.9, 123.7, 98.8, 94.8, 91.3, 69.6, 56.1,
9.6, 46.9, 40.3, 35.9, 35.0, 31.5, 29.8, 29.8, 29.5, 22.8, 22.7, 16.4,
ProteinExt Mannalian Membrane Protein Extraction Kit. This step is
improved according to the experimental plan. The treated cells are
processed according to the method of cell passage, and the cell pellet is
obtained by centrifugation. Cell pellets were washed twice with 1 mL
pre-cooled PBS, centrifuged at 1000g for 3 min, and discard the super-
+
+
5.9. HRMS (ESI) calculated for C43
H
42
N
4
NaO
8
[M + Na] : 765.2895,
found 765.2897.
′
4
.2.9. N-(2-((2,6-Dimethoxy-4-((3-methyl-[1,1 -biphenyl]-4-yl)methoxy)
natant carefully. Then added 150 L MPEB I solution to the pellet, shake
μ
benzyl)amino)ethyl)-5-(2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindolin-4-
yl)pent-4-ynamide (21a)
vigorously for 15 s, and incubated on ice for 2 min, shaking for 2 min
each time, 5 times in total. Next, centrifuged at 16000g for 15 min at
To a solution of compound 20 (140 mg, 370 µmol) in DMF (2 mL)
◦
2
–8 C. The supernatant is cytoplasmic protein and placed it on ice.
was added 15a (180 mg, 370 µmol), Pd(PPh
3
)
2
Cl
2
(25.0 mg, 370 µmol),
Added 30 ul MPEB II to the pellet, resuspended the pellet, shaked
vigorously for 15 s, incubated at low temperature for 30 min, and shakes
CuI (7.10 mg, 370 µmol) and DIPEA (1 mL). The flask was stirred under
◦
the argon at 50 C for 12 h. Then the mixture was diluted with EtOAc
once every 5 min. Then added 300
μ
l MPEB III, shake vigorously for 5 s,
(
15 mL) and washed with saturated NaCl solution (5 mL), dried over
◦
centrifuged at 16000g for 15 min at 2–8 C. Carefully collect the su-
Na SO and concentrated under reduced pressure. The residue was pu-
2
4
pernatant (membrane protein) and store it together with the cyto-
rified by column chromatography on silica gel (dichloromethane/
◦
plasmic protein – 80 C for subsequent experiments.
methanol 10:1) to afford compound 21a (183 mg, 65%) as white solid.
◦
M.p. 142.1–143.5 C; IR (KBr): 2920, 2840, 1720, 1646, 1597, 1422,
ꢀ
1 1
1
1
2
5
2
1
1
4
C
397, 1151, 1113, 740, 737 cm . H NMR (400 MHz, CDCl ) δ 7.89 (m,
3
4
.7. Western blot analysis
H), 7.75 (dd, J = 6.5, 1.9 Hz, 1H), 7.65 (m, 2H), 7.36 (m, 9H), 6.19 (s,
H), 5.06 (s, 3H), 4.17 (m, 2H), 3.81 (s, 6H), 3.64 (m, 2H), 3.02 (t, J =
.3 Hz, 2H), 2.79 (ddt, J = 18.1, 16.6, 6.3 Hz, 5H), 2.58 (t, J = 6.9 Hz,
Cells were seeded in 6-well culture plates, treated with compound at
indicated concentrations for 48 h, and lysed in RIPA lysis buffer sup-
plemented with protease inhibitors cocktail/PMSF and dephosphorylase
inhibitor NaF. The protein concentration was measured with the BCA
Protein Assay kit (Beyotime Biotechnology, P0012). Equal amounts of
proteins were electrophoresed by SDS-PAGE (10%) under denaturing
conditions and transferred onto the PDVF membranes (Millipore Cor-
poration, IPVH00010). Membranes were blocked in 5% nonfat milk (BD
Difco, 232100) and then incubated with primary antibodies. After being
washed for three times, the membranes were incubated with secondary
antibodies and detected by Luminescent Image Analyzer LSA 4000 (GE,
Fairfield, CO, USA). Antibodies used in this study were: anti-PD-L1 (no.
H), 2.25 (s, 3H), 2.16 (m, 1H). 13C NMR (100 MHz, CDCl
) δ 172.3,
3
71.4, 168.7, 166.7, 166.5, 159.9, 143.2, 138.4, 134.7, 134.1, 132.2,
30.6, 129.4, 128.5, 128.2, 127.0, 125.8, 122.9, 97.7, 91.2, 69.5, 56.6,
9.6, 40.2, 36.4, 35.2, 31.5, 22.8, 16.4, 16.4. HRMS (ESI) calculated for
+
+
43
H
42
4
N NaO
8
[M + Na] : 765.2895, found 762.2899.
4
.3. Cell lines and mice
Cells were cultured in RPMI 1640 (MC-38, B16F10, 4T1, MCF-7,
skno-1, kasumi-1, HL-60, PC3, NIH-3T3, L-O2), DMEM (MB-49, 293)
or IMDM (SW480) medium supplemented with 10% FBS (Procell), 100
6
6248-1-Ig), anti-GAPDH(no. 60004-1-Ig).
◦
U/mL penicillin, and 100
% CO
μ
g/mL streptomycin at 37 C in the presence of
5
2
. Female C57BL/6 mice (6–8 weeks old) were purchased from
Beijing Vital River Laboratory (Beijing, People’s Republic of China). The
4.8. Animal study
mice were housed in a pathogen-free environment that was maintained
◦
at a temperature of 25 C and a relative humidity of 45%–55%.
The animal studies were approved by the Institutional Review Board
of Nankai University. All animal studies were conducted according to
protocols approved by the Animal Ethics Committee of Nankai Univer-
4
.4. MTT assay
sity. MC-38 (5.0 × 10^6 cells/100
μ
L) cells was injected subcutaneously
Adherent cells were seeded in 96-well plates at a density of
into six-week-old C57BL/6 mice, respectively. When the tumor volume
3
3
000–5000 cells/well and cultured for overnight. And then the cells
were treated with different concentrations of synthetic compounds for
reached about 50–100 mm , the mice were randomly divided to vehicle
control, and compounds 21a (15 mg/kg/day, iv, n = 5 for each group)
and were treated as above dose. Tumor volume and mice weight were
measured each day after the initiation of the treatment. Mice were
executed and tumors were harvested after 11 days. Tumor volume =
length*width*width/2.
4
8 h. After 48 h of drug incubation, 15 L of MTT (5 mg/mL, Med-
μ
ChemExpress (MCE), HY-15924) solution was added to each well and
incubation was continued for another 3–4 h. The supernatant was dis-
carded, and formazan crystals were dissolved in 100 L of dimethyl
μ
9