DOI: 10.1002/cbic.201200346
Mapping the Mechanism of the Resorcinol Ring Formation Catalyzed by
ArsB, a Type III Polyketide Synthase from Azotobacter vinelandii
Sarah E. Posehn, Sun Young Kim, Andrew G. H. Wee,* and Dae-Yeon Suh*[a]
Polyketides, produced by polyketide synthases (PKSs), are
a large class of secondary metabolites widely found in bacteria,
fungi, plants, and marine animals. Polyketide-based drugs in-
clude antibiotics, immunosuppressants, antiparasitics, and cho-
lesterol-lowering, anticancer and antioxidant agents. PKSs are
classified into three types according to their architecture.
Type I PKSs are large, modular, multidomain enzymes, and
type II PKSs are dissociable multienzyme complexes. In type I
and II PKSs, each domain or enzyme typically performs a dis-
crete function.[1] In contrast, type III PKSs—homodimers com-
prising subunits of about 45 kDa—are multifunctional.[2] Each
subunit iteratively condenses a starter acyl-CoA substrate with
a number of acetate units derived from malonyl-CoA (2,
Scheme 1), and cyclizes the linear polyketide intermediate to
produce polyketides with distinct ring structures.
the triketo CoA thioester (3), produced after three condensa-
tion reactions could be converted to the final 5-substituted re-
sorcinol (7) through several different pathways. Resorcinol for-
mation can either begin with hydrolysis of the thioester bond
in 3 to give the triketocarboxylate 8 (pathway A), or begin with
aldol cyclization of 3 to give the cyclized thioester 9 (path-
way B). In the “hydrolysis first” pathway A, aldol cyclization of 8
can occur concomitantly with decarboxylation (pathway A1) to
give 10. Alternatively, the aldol cyclization of 8 can occur first
(pathway A2) to give an equilibrium mixture of 11, 12, and
possibly the cyclized dianion 13.[10] The cyclization might then
be followed by sequential b-keto decarboxylation and dehy-
dration (pathway A2.1) or by coupled decarboxylation/dehy-
dration (pathway A2.2) to give the final product 7. Alternative-
ly, the nonaromatic cyclized compound (11, 12, or 13) might
undergo dehydration and aromatization to give the substitut-
ed b-resorcylic acid 16, which is then decarboxylated to 7. For
the “aldol first” pathway B, the cyclized thioester 9 can either
be hydrolyzed to give the same equilibrium mixture of 11, 12,
and 13 (pathway B1), or 9 can undergo dehydration and aro-
matization to the b-resorcylic thioester 14, which then enters
into a hydrolysis/decarboxylation sequence to form 7 (path-
way B2).
Although structurally simpler than type I and II enzymes,
type III PKSs also produce a diverse array of polyketide prod-
ucts. The diversity comes from the choice of the starter CoA
substrate, the number of condensation steps, and the cycliza-
tion mechanism. ArsB and ArsC from Azotobacter vinelandii uti-
lize long-chain fatty acyl-CoA esters (1a),[3] whereas chalcone
synthase (CHS) and stilbene synthase (STS), the two most stud-
ied plant type III PKSs, use p-coumaroyl-CoA or cinnamoyl-CoA
(1b) as the starter substrate.[4,5] Although the number of decar-
boxylative condensations catalyzed by type III PKSs varies from
one[6] to seven,[7] the majority of type III PKSs catalyze three
condensation reactions to give triketo CoA thioester intermedi-
ates (commonly called tetraketide intermediates, 3) that can
be cyclized into different six-membered ring structures
(Scheme 1).[8] CHS catalyzes the C-6!C-1 Claisen acylation to
give a phloroglucinol derivative (4), whereas ArsC catalyzes O-
acylation to produce 2’-oxoalkyl-a-pyrones (5). In these two
cyclization reactions, CoA serves as a leaving group. On the
other hand, alkylresorcylic acid synthase (ARAS) connects the
C-2 methylene carbon with the C-7 carbonyl carbon through
an aldol condensation and also hydrolyzes the CoA thioester
to afford 6-alkyl-b-resorcylic acid (6).[9] STS and ArsB also cata-
lyze an aldol cyclization, but instead produce 5-substituted re-
sorcinols (7; Scheme 1).
A few studies have addressed the mechanism of STS-cata-
lyzed resorcinol ring formation. In an elegant study using deu-
terated malonyl-CoA and mass spectrometry, Shibuya et al.[11]
demonstrated that stilbenecarboxylate (16b) is not an inter-
mediate in the STS-catalyzed resorcinol ring formation and
proposed that thioester hydrolysis precedes aldol cyclization
and decarboxylation (pathway A). Funa et al.[3] suggested that
16a is not an intermediate in the ArsB-catalyzed resorcinol
ring formation, given that 16a was not detected in the reac-
tion mixture of ArsB. A parallel observation was made with STS
and 16b by Li et al.[12] Meanwhile, Austin et al.[5] proposed
pathway A2.2 (coupled decarboxylation/dehydration of 12) as
the most likely mechanism for STS-catalyzed resorcinol ring
formation, based on solution chemistry of biomimetic poly-
ketide cyclization[13] and a computer-assisted docking study.
However, direct evidence for the “hydrolysis first” hypothesis
has been lacking. One way to elucidate the mechanism of a
multistep enzymatic reaction is to examine the putative reac-
tion intermediates. In this study, we prepared a linear triketo-
carboxylate 3,5,7-trioxoeicosanoic acid (C20-TKA, 8a) and incu-
bated it with ArsB to determine the first step of the ArsB-cata-
lyzed resorcinol ring formation.
The resorcinol ring formation catalyzed by STS and ArsB in-
volves aldol cyclization, hydrolysis of the thioester, decarboxy-
lation, dehydration and aromatization. However, the sequence
of these reactions remains unresolved. As shown in Scheme 2,
[a] S. E. Posehn, Dr. S. Y. Kim, Prof. A. G. H. Wee, Prof. D.-Y. Suh
Department of Chemistry and Biochemistry, University of Regina
3737 Wascana Parkway, Regina, SK S4S 0A2 (Canada)
Diketo acids and their dipotassium salts have commonly
been synthesized by treating the methyl ester with ethanolic
KOH.[14,15] Attempts to use the same strategy to synthesize 8a
were unsuccessful, as the methyl ester of 8a was unstable and
rapidly aldol-cyclized under the basic conditions.[10] Instead, 8a
Supporting information for this article is available on the WWW under
http://dx.doi.org/10.1002/cbic.201200346.
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