110-60-1Relevant academic research and scientific papers
Occurrence of agmatine pathway for putrescine synthesis in Selenomonas ruminatium
Liao, Shaofu,Poonpairoj, Phuntip,Ko, Kyong-Cheol,Takatuska, Yumiko,Yamaguchi, Yoshihiro,Abe, Naoki,Kaneko, Jun,Kamio, Yoshiyuki
, p. 445 - 455 (2008)
Selenomonas ruminantium synthesizes cadaverine and putrescine from L-lysine and L-ornithine as the essential constituents of its peptidoglycan by a constitutive lysine/ornithine decarboxylase (LDC/ODC). S. ruminantium grew normally in the presence of the specific inhibitor for LDC/ODC, DL-α-difluoromethylornithine, when arginine was supplied in the medium. In this study, we discovered the presence of arginine decarboxylase (ADC), the key enzyme in agmatine pathway for putrescine synthesis, in S. ruminantium. We purified and characterized ADC and cloned its gene (adc) from S. ruminantium chromosomal DNA. ADC showed more than 60% identity with those of LDC/ODC/ADCs from Gram-positive bacteria, but no similarity to that from Gram-negative bacteria. In this study, we also cloned the aguA and aguB genes, encoding agmatine deiminase (AguA) and N-carbamoyl-putrescine amidohydrolase (AguB), both of which are involved in conversion from agmatine into putrescine. AguA and AguB were expressed in S. ruminantium. Hence, we concluded that S. ruminantium has both ornithine and agmatine pathways for the synthesis of putrescine.
Novel characteristics of Selenomonas ruminantium lysine decarboxylase capable of decarboxylating both L-lysine and L-ornithine
Takatsuka, Yumiko,Onoda, Motoko,Sugiyama, Takeyoshi,Muramoto, Koji,Tomita, Toshio,Kamio, Yoshiyuki
, p. 1063 - 1069 (1999)
Lysine decarboxylase (LDC; EC 4.1.1.18) of Selenomonas ruminantium is a constitutive enzyme and is involved in the synthesis of cadaverine, which is an essential constituent of the peptidoglycan for normal cell growth. We purified the 5. ruminantium LDC by an improved method including hydrophobic chromatography and studied the fine characteristics of the enzyme. Kinetic study of LDC showed that 5. ruminanitum LDC decarboxylated both L-lysine and L-ornithine with similar Km, and the decarboxylase activities towards both substrates were competitively and irreversibly inhibited by DL-α-difluoromethylornithine, which is a specific inhibitor of ornithine decarboxylase (EC 4.1.1.17). We also showed a drastic descent of LDC activity owing to the degradation of LDC at entry into the stationary phase of cell growth.
Turtschamide, a cytotoxic putrescine bisamide from Corydalis turtschaninovii
Kim, Ki Hyun,Choi, Sang Un,Lee, Kang Ro
, p. 1490 - 1492 (2012)
A putrescine bisamide with a unique cyclic structure derived from l-tyrosine, turtschamide (1), was isolated from the tubers of Corydalis turtschaninovii. The structure of 1 was established by extensive spectroscopic study, and its absolute configuration was determined by a combination of NOE experiment and application of the Marfey's method. Turtschamide (1) exhibited cytotoxicity against the A549, SK-OV-3, SK-MEL-2, and HCT-15 cells.
Analysis of catalytic determinants of diaminopimelate and ornithine decarboxylases using alternate substrates
Fogle, Emily J.,Toney, Michael D.
, p. 1113 - 1119 (2011)
Diaminopimelate decarboxylase (DAPDC) and ornithine decarboxylase (ODC) are pyridoxal 5′-phosphate dependent enzymes that are critical to microbial growth and pathogenicity. The latter is the target of drugs that cure African sleeping sickness, while the former is an attractive target for antibacterials. These two enzymes share the (β/α)8 (i.e., TIM barrel) fold with alanine racemase, another pyridoxal 5′-phosphate dependent enzyme critical to bacterial survival. The active site structural homology between DAPDC and ODC is striking even though DAPDC catalyzes the decarboxylation of a D stereocenter with inversion of configuration and ODC catalyzes the decarboxylation of an L stereocenter with retention of configuration. Here, the structural and mechanistic bases of these interesting properties are explored using reactions of alternate substrates with both enzymes. It is concluded that simple binding determinants do not control the observed stereochemical specificities for decarboxylation, and a concerted decarboxylation/proton transfer at Cα of the D stereocenter of diaminopimelate is a possible mechanism for the observed specificity with DAPDC.
Nickel and nickel-magnesia catalysts active in the hydrogenation of 1,4-butanedinitrile
Serra, Marc,Salagre, Pilar,Cesteros, Yolanda,Medina, Francisco,Sueiras, Jesus E.
, p. 210 - 219 (2001)
Several NiO-MgO systems were synthesized to be studied as nickel catalysts for the hydrogenation of 1,4-butanedinitrile in the gas phase and compared with a bulk NiO of controlled morphology. All samples were characterized by XRD, BET, TPR, TPD, SEM, and H2 chemisorption techniques. The Ni-MgO systems had higher activities than the Ni bulk catalyst. The most active catalyst at all reaction temperatures was type R4CB which had homogeneous particles of about 1000 A, the highest metal surface area, and the highest coverage with weakly bound hydrogen. The presence of basic magnesia suppresses the condensation reactions and consequently favors the elimination of amines, and prevents catalyst deactivation. The selectivity toward the different products not only depends on the catalytic properties but can also be modified by controlling the hydrogen/dinitrile ratio. The highest selectivity to 4-aminobutanenitrile was achieved by catalyst R4CB, with 85% at 100% conversion and working at a space velocity of 13,000 h-1 and 343 K. This selectivity could be increased by lowering the hydrogen/butanedinitrile ratio.
Preparation and Thermal Square Planar-Octahedral Transformation of Nickel(II) Complexes Containing 1,2-Butanediamine or 3,3-Dimethyl-1,2-butanediamine in Solid Phase
Ihara, Yoshinori,Wada, Akiko,Fukuda, Yutaka,Sone, Kozo
, p. 2309 - 2316 (1986)
Nickel(II) complexes of 1,2-butanediamine (1,2-bn) and 3,3-dimethyl-1,2-butanediamine (dmbn), were prepared, and their thermal behavior was investigated in solid phase.The original complexes were all violet, octahedral diaquabis(diamine) complexes (X2; X=Cl, Br, NO3 or ClO4).The 1,2-bn complexes with Cl- or Br- and the dmbn complex with NO3- showed a two-step thermochromism, violet->yellow->violet blue, upon heating.These steps correspond to structural changes to a square planar anhydride, and then to an octahedral dianiono complex.The complexes of both ligands with ClO4- underwent only thermal deaquation, changing into orange square planar anhydride.Other salts, the 1,2-bn complex with NO3- and the dmbn complexes with Cl- or Br-, were converted into octahedral dianiono complexes by thermal deaquation-anation which occurs in one step.The differences among the thermal reactivities of the complexes with different diamines can be understood on the basis of steric hindrance caused by the substituent groups on the diamine.
CHENGES IN POLYAMINES AND RELATED ENZYMES WITH LOSS OF VIABILITY IN RICE SEEDS.
Mukhopadhyay, A.,Choudhuri, M. M.,Sen, K.,Ghosh, B.
, p. 1547 - 1552 (1983)
Putrescine, spermidine and spermine of high vigour, low vigour and non viable (classes 1, 2 and 3 respectively) seeds of Oryza sativa increased with loss of viability.The largest concentration of spermine was found in non-viable embryos.Spermine was absent in the husks of all the three categories of seeds.Arginine decarboxylase was greatest in high vigoured seeds and its activity gradually declined with loss of viability.However, diamine oxidase and polyamine oxidase activities gradually increased with the loss of viability of the seeds while DNA, RNA and protein contents decreased.The total content of polyamines increased on kinetin treatment but declined on ABA treatment.DNA, RNA and protein followed the same trend as polyamines.The polyamine contents increased by ca 3- and 4-fold, respectively, in high vigoured and low vigoured seeds on 1E-4 M kinetin treatment.The activity of ADC followed the same change as that of the polyamines in both cases, but the reverse was observed for the activities of diamine and polyamine oxidases.Key Word Index - Oryza sativa; Gramineae; rice; spermine; spermidine; putrescine; arginine; arginine decarboxylase; polyamine oxidase.
Further insight into the inhibitory action of a LIM/double zinc-finger motif of an agmatinase-like protein
Cofre, Jaime,Montes, Paola,Vallejos, Alejandro,Benítez, José,García, David,Martínez-Oyanedel, José,Carvajal, Nelson,Uribe, Elena
, p. 92 - 95 (2014)
Agmatine is a precursor for polyamine biosynthesis also associated to neurotransmitter, anticonvulsant, antineurotoxic and antidepressant actions in the brain. It results from decarboxylation of l-arginine by arginine decarboxylase and it is hydrolyzed to urea and putrescine by agmatinase. Recently, we have described a new protein which also hydrolyzes agmatine although its sequence greatly differs from all known agmatinases. This agmatinase-like protein (ALP) contains a LIM-like double Zn-finger domain close to its carboxyl terminus, whose removal results in a truncated variant with a 10-fold increased kcat, and a 3-fold decreased Km value for agmatine. Our proposal was that the LIM-domain functions as an autoinhibitory, regulatory entity for ALP. Results in this report provide additional support for the postulated inhibitory effect. The purified isolated LIM domain was shown to be competitively inhibitory to a truncated variant ALP (lacking the LIM-domain), but not to the wild-type species. The C453A variant was shown to be a Zn2 +-free enzyme with kinetic parameters similar to those of the truncated-ALP. A molecular dynamic simulation of a modeled LIM-domain 3D structure showed that, as a consequence of C453A mutation, the coordination of the zinc ion is broken and the structure of the zinc finger is melted. The inhibitory action of the LIM/double Zinc-finger motif was associated to a significant conformational change, as detected by tryptophan fluorescence studies, but was not related to changes in the association of the enzyme with the catalytically essential Mn2 +.
Polyamine modification by acrolein exclusively produces 1,5-diazacyclooctanes: A previously unrecognized mechanism for acrolein-mediated oxidative stress
Tsutsui, Ayumi,Imamaki, Rie,Kitazume, Shinobu,Hanashima, Shinya,Yamaguchi, Yoshiki,Kaneda, Masato,Oishi, Shinya,Fujii, Nobutaka,Kurbangalieva, Almira,Taniguchi, Naoyuki,Tanaka, Katsunori
, p. 5151 - 5157 (2014)
Acrolein, a toxic unsaturated aldehyde generated as a result of oxidative stress, readily reacts with a variety of nucleophilic biomolecules. Polyamines, which produced acrolein in the presence of amine oxidase, were then found to react with acrolein to produce 1,5-diazacyclooctane, a previously unrecognized but significant downstream product of oxidative stress. Although diazacyclooctane formation effectively neutralized acrolein toxicity, the diazacyclooctane hydrogel produced through a sequential diazacyclooctane polymerization reaction was highly cytotoxic. This study suggests that diazacyclooctane formation is involved in the mechanism underlying acrolein-mediated oxidative stress.
Hydrogenation of N-Heteroarenes Using Rhodium Precatalysts: Reductive Elimination Leads to Formation of Multimetallic Clusters
Kim, Sangmin,Loose, Florian,Bezdek, Máté J.,Wang, Xiaoping,Chirik, Paul J.
, p. 17900 - 17908 (2019/11/19)
A rhodium-catalyzed method for the hydrogenation of N-heteroarenes is described. A diverse array of unsubstituted N-heteroarenes including pyridine, pyrrole, and pyrazine, traditionally challenging substrates for hydrogenation, were successfully hydrogenated using the organometallic precatalysts, [(η5-C5Me5)Rh(N-C)H] (N-C = 2-phenylpyridinyl (ppy) or benzo[h]quinolinyl (bq)). In addition, the hydrogenation of polyaromatic N-heteroarenes exhibited uncommon chemoselectivity. Studies into catalyst activation revealed that photochemical or thermal activation of [(η5-C5Me5)Rh(bq)H] induced C(sp2)-H reductive elimination and generated the bimetallic complex, [(η5-C5Me5)Rh(μ2,η2-bq)Rh(η5-C5Me5)H]. In the presence of H2, both of the [(η5-C5Me5)Rh(N-C)H] precursors and [(η5-C5Me5)Rh(μ2,η2-bq)Rh(η5-C5Me5)H] converted to a pentametallic rhodium hydride cluster, [(η5-C5Me5)4Rh5H7], the structure of which was established by NMR spectroscopy, X-ray diffraction, and neutron diffraction. Kinetic studies on pyridine hydrogenation were conducted with each of the isolated rhodium complexes to identify catalytically relevant species. The data are most consistent with hydrogenation catalysis prompted by an unobserved multimetallic cluster with formation of [(η5-C5Me5)4Rh5H7] serving as a deactivation pathway.

