H. Wu, P. Teng, J. Cai
FULL PAPER
were purchased from Chem-Impex International, Inc. (Wood Dale,
IL, USA). All other solvents and reagents were purchased from
assorted vendors and used without further purification. NMR
spectroscopic data for building blocks was obtained with a
400 MHz NMR spectrometer. High resolution masses of building
blocks were determined with a Liquid Chromatography/Quadru-
pole Time-of Flight mass spectrometer. Masses of peptidomimetics
were obtained using a Proteomics Analyzer. Solid-phase synthesis
was conducted in peptide synthesis vessels on a shaker. Oligomers
were analyzed and purified with an HPLC system, and then lyophi-
lized.
4.52 (m, 2 H), 4.37–3.92 (m, 5 H), 3.92–3.21 (m, 3 H), 3.06–3.02
(m, 2 H), 1.42–1.26 (m, 15 H) ppm. 13C NMR (100 MHz CDCl3)
(two rotamers): δ = 172.8, 156.9, 156.7, 156.4, 156.3, 143.9, 143.8,
141.3, 132.4, 125.0, 119.9, 117.3, 79.3, 76.8, 66.7, 66.6, 52.1, 50.5,
49.8, 49.1, 47.2, 40.2, 32.1, 29.3, 28.4, 22.8 ppm. HR-ESI: [M +
Na]+ calc: 618.2786, found 618.2810.
Compound 4: Yield 80% (from intermediate 6b). 1H NMR
(400 MHz, CDCl3) (two rotamers): δ = 9.08 (s, 1 H), 8.11 (d, J =
8 Hz, 1 H), 7.70 (d, J = 8 Hz, 2 H), 7.62–7.21 (m, 10 H), 5.84–5.61
(m, 1 H), 5.21–5.07 (m, 2 H), 4.55–4.50 (m, 2 H), 4.35–4.15 (m, 3
H), 4.02–3.71 (m, 3 H), 3.48–2.60 (m, 3 H), 1.61 (s, 9 H) ppm. 13C
NMR (100 MHz CDCl3) (two rotamers): δ = 173.5, 157.0, 156.6,
156.4, 156.2, 149.6, 143.8, 141.2, 135.4, 132.2, 132.1, 127.6, 127.0,
125.2, 125.0, 124.5, 124.0, 123.8, 122.7, 119.9, 118.9, 118.3, 117.6,
116.1, 115.3, 83.7, 83.6, 67.0, 66.8, 51.7, 51.3, 50.6, 50.5, 49.9, 49.1,
47.1, 28.1 ppm. HR-ESI: [M + H]+ calc: 654.2810, found 654.2826.
2. Preparation of γ-AApeptide Building Blocks: N-Alloc γ-AApep-
tide building blocks 1, 2, 5 were synthesized using Route 1 in Fig-
ure 2 by following previously reported methods.[5,15] Building
blocks 3 and 4 were synthesized by Route 2 in Figure 2 and the
procedure for preparation of 3 is briefly shown as follows. To
benzyl ester[5,15] (2 g, 1.66 mmol) in methanol (50 mL) containing
1% acetic acid was added Pd/C (0.2 g, 10wt.-%). Hydrogenation
was conducted at atmospheric pressure and room temperature for
2 h. After filtration and evaporation, the remaining solid was sus-
pended in CH2Cl2 (50 mL) and N,N-diisopropylethylamine
(434 μL, 2.49 mmol, 1.5 equiv.) was added. The reaction mixture
was cooled to 0 °C, then a solution of allyl chloroformate (176 μL,
1.66 mmol, 1 equiv.) in CH2Cl2 was slowly added over 1 h. The
mixture was allowed to stir at room temperature for another 2 h,
and then washed with saturated citric acid (30 mL ϫ3) and brine
solution, dried with Na2SO4, and concentrated under vacuum. The
pure building block 3 was obtained as a white foam solid after flash
chromatography with 10% MeOH/CH2Cl2 (1.68 g, 85% yield).
1
Compound 5: Yield 75%. H NMR (400 MHz, CDCl3) (two rota-
mers): δ = 7.73 (d, J = 8 Hz, 2 H), 7.55 (t, J = 8 Hz, 2 H), 7.37 (t,
J = 8 Hz, 2 H), 7.29 (t, J = 8 Hz, 2 H), 5.85–5.76 (m, 1 H), 5.29–
5.09 (m, 2 H), 4.55–4.54 (m, 2 H), 4.36–4.15 (m, 3 H), 4.04–3.89
(m, 2 H), 3.64–3.58 (m, 1 H), 3.43–3.13 (m, 2 H), 1.16–0.99 (m, 3
H) ppm. 13C NMR (100 MHz CDCl3) (two rotamers): δ = 173.1,
157.0, 156.5, 143.8, 141.3, 132.3, 124.9, 119.9, 117.5, 66.9, 66.7,
53.2, 52.9, 49.8, 49.0, 47.2, 46.4, 18.4 ppm. HR-ESI: [M + H]+ calc:
439.1864, found 439.1872.
3. Solid Phase Synthesis of γ-AApeptides and Other Classes of Pep-
tidomimetics: Solid phase synthesis was conducted in peptide syn-
thesis vessels on a Burrell Wrist-Action shaker. 100 mg of Rink
amide resin (0.07 mmol) was treated with 20% Piperidine/DMF
solution (3 mL) for 15 min (ϫ2) to remove the Fmoc protecting
group. The solution was drained and beads were washed with
DCM (3ϫ 3 mL) and DMF (3ϫ 3 mL). A solution of N-alloc γ-
AApeptide building block (2 equiv.), HOBt (38 mg, 0.28 mmol),
and DIC (44 μL, 0.28 mmol) in DMF (3 mL) was agitated for
5 min, and then added to the resin. The mixture was allowed to
react at room temperature for 6 h and drained. The beads were
washed with DCM (3ϫ 3 mL) and DMF (3ϫ 3 mL), followed by
a capping reaction with acetic anhydride (500 μL in 3 mL pyridine).
After washing with DMF (3ϫ 3 mL) and DCM (3ϫ 3 mL), to the
beads were added Pd(PPh3)4 (8 mg, 0.007 mmol) and Me2NH·BH3
(25 mg, 0.42 mmol) in DCM (3 mL).[14] The alloc deprotection re-
action was agitated for 10 min and repeated one more time. The
beads were washed with DCM and DMF, followed by the reaction
with acylating agents (4 equiv.) and DIPEA (6 equiv.) in 3 mL of
DCM for 30 min (ϫ2) or with carboxylic acid (4 equiv.), HOBt
(8 equiv.), and DIC (8 equiv.) for 4 h (ϫ2). The previous steps were
repeated until the desired sequences were obtained. After that, the
resin were washed with DCM and dried in vacuo. Peptide cleavage
1
Compound 1: Yield 65%. H NMR (400 MHz, CDCl3) (two rota-
mers): δ = 7.74 (d, J = 8 Hz, 2 H), 7.56 (t, J = 8 Hz, 2 H), 7.38 (t,
J = 8 Hz, 2 H), 7.29 (t, J = 8 Hz, 2 H), 5.92–5.73 (m, 1 H), 5.29–
5.06 (m, 2 H), 4.57–4.28 (m, 5 H), 4.17–3.83 (m, 3 H), 3.60–3.15
(m, 2 H), 1.69–1.23 (m, 3 H), 0.93–0.87 (m, 6 H) ppm. 13C NMR
(100 MHz CDCl3) (two rotamers): δ = 173.6, 173.2, 157.8, 156.8,
156.7, 156.6, 156.2, 143.8, 141.3, 132.3, 124.5, 119.9, 118.2, 117.4,
66.8, 66.6, 52.3, 49.8, 48.7, 47.2, 41.7, 24.8, 23.2, 22.0, 21.8, 21.7,
14.2 ppm. HR-ESI: [M + H]+ calc: 481.2333, found 481.2352.
1
Compound 2: Yield 61%. H NMR (400 MHz, CDCl3) (two rota-
mers): δ = 8.74 (s, 1 H), 7.73 (d, J = 8 Hz, 2 H), 7.50–7.47 (m, 2
H), 7.36 (t, J = 8 Hz, 2 H), 7.28–7.18 (m, 7 H), 5.82–5.74 (m, 1
H), 5.21–5.07 (m, 2 H), 4.53–4.43 (m, 2 H), 4.34–4.25 (m, 2 H),
4.11–3.21 (m, 6 H), 2.82 (s, 2 H) ppm. 13C NMR (100 MHz,
CDCl3) (two rotamers): δ = 173.5, 157.5, 156.9, 156.5, 156.1, 143.8,
143.7, 141.3, 137.2, 132.2, 129.2, 129.1, 128.6, 127.7, 127.0, 126.7,
125.2, 119.9, 117.6, 66.9, 60.5, 51.7, 49.8, 49.0, 47.1, 38.8, 21.0,
14.2 ppm. HR-ESI: [M + H]+ calc: 515.2177, found 515.2196.
Compound 3: Yield 85% (from intermediate 6a). 1H NMR
(400 MHz, CDCl3) (two rotamers): δ = 8.74 (s, 1 H), 7.73 (d, J = was done in a 4 mL vial by treating resin with TFA/H2O/TIS
8 Hz, 2 H), 7.57 (d, J = 8 Hz, 2 H), 7.37 (t, J = 8 Hz, 2 H), 7.28 (95:2.5:2.5) for 2 h. The solvent was evaporated and the crude reac-
(t, J = 8 Hz, 2 H), 5.91–5.79 (m, 1 H), 5.28–5.07 (m, 2 H), 4.55–
tion was analyzed and purified on an analytical (1 mL/min) and
Table 1. Purity, yield and MALDI-TOF analysis of γ-AApeptides.
γ-AApeptide
Purity (based on crude
HPLC trace)
Yield [%] (based on
loading of the resin)
Exact mass
(theoretical)
Mass ([M + H]+ as determined by
MALDI-TOF)
γ-AA1
γ-AA2
γ-AA3
γ-AA4
γ-AA5
γ-AA6
82%
86%
80%
50%
55%
60%
15
18
17
15
12
11
1159.7522
1045.6324
1129.3735
1159.7190
1055.5288
1144.5045
1160.8005
1046.5728
1130.4100
1160.6294
1056.5046
1145.5491
1764
www.eurjoc.org
© 2014 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
Eur. J. Org. Chem. 2014, 1760–1765