Bioorganic & Medicinal Chemistry Letters
Development of small molecules targeting the pseudokinase Her3
Sang Min Lim a,b,c, , Ting Xie a,b,c, , Kenneth D. Westover d, Scott B. Ficarro b,e, Hyun Seop Tae f,
Deepak Gurbani d, Taebo Sim g,h, Jarrod A. Marto b,e, Pasi A. Jänne i, Craig M. Crews f, Nathanael S. Gray a,b,
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a Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA
b Department of Biological Chemistry & Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
c Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, USA
d Departments of Biochemistry and Radiation Oncology, The University of Texas Southwestern Medical Center at Dallas, Dallas, TX 75390, USA
e Department of Cancer Biology and Blais Proteomics Center, Dana-Farber Cancer Institute, Boston, MA 02115, USA
f Departments of Chemistry, Pharmacology, and Molecular, Cellular and Development Biology, Yale University, New Haven, CT 06511, USA
g Chemical Kinomics Research Center, Korea Institute of Science and Technology, Seongbuk-gu, Seoul 136-791, Republic of Korea
h KU-KIST Graduate School of Converging Science and Technology, Seongbuk-gu, Seoul 136-713, Republic of Korea
i Lowe Center for Thoracic Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA
a r t i c l e i n f o
a b s t r a c t
Article history:
Her3 is a member of the human epidermal growth factor receptor (EGFR) tyrosine kinase family, and it is
often either overexpressed or deregulated in many types of human cancer. Her3 has not been the subject
of small-molecule inhibitor development because it is a pseudokinase and does not possess appreciable
kinase activity. We recently reported on the development of the first selective irreversible Her3 ligand
(TX1-85-1) that forms a covalent bond with cysteine 721 which is unique to Her3 among all kinases.
We also developed a bi-functional compound (TX2-121-1) containing a hydrophobic adamantane moiety
and the same warhead of TX1-85-1 that is capable of inhibiting Her3-dependent signaling and growth.
Here we report on the structure-based medicinal chemistry effort that resulted in the discovery of these
two compounds.
Received 19 March 2015
Revised 22 April 2015
Accepted 30 April 2015
Available online xxxx
Keywords:
Her3
Pseudokinase
Hydrophobic tagging
Cancer
Ó 2015 Elsevier Ltd. All rights reserved.
Pyrazolopyrimidine
Her3 is a member of the human epidermal growth factor recep-
tor (EGFR) tyrosine kinase family along with Her1 (EGFR), Her2 and
Her4. EGFR family-dependent signaling frequently becomes dereg-
ulated in human cancers due to either receptor/ligand over-expres-
sion or oncogenic mutations that result in constitutive activation of
the kinase domain.1,2 Extensive efforts to target activated mutants
of EGFR and Her2 for the treatment of patients with non-small cell
lung cancers (NSCLCs) and breast cancer has resulted in develop-
ment of several FDA-approved drugs such as Gefitinib, Erlotinib,
Lapatinib, and Afatinib. In stark contrast, Her3 has not been the
intentional target of small-molecule inhibitor discovery efforts
because Her3 has been historically classified as a ‘pseudokinase’
because: (1) early biochemical assays showed that Her3 was not
capable of catalyzing auto-phosphorylation and phosphorylation
of substrates,3,4 (2) Asp 813 of EGFR, a conserved residue acting
as a catalytic base for the transfer of the phosphate group, is
replaced with the catalytically ineffective Asn 815 in Her3, and
(3) substitution of His 740 in Her3 for Glu 738 of EGFR prevents
Her3 from forming a key salt bridge that is important for maintain-
ing an active kinase conformation.5,6 A recent report suggests that
Her3 may possess very weak kinase activity,6 although it remains
unclear whether this activity is required for Her3-dependent sig-
naling. Despite questions regarding its kinase activity, Her3 is well
documented as an essential hetero-dimerization partner with
EGFR, Her2, and c-Met.1,2,7 The Her3 kinase domain serves as an
activator of a heterodimer5,8 resulting in phosphorylation of tyro-
sine residues in the C-terminus of the heterodimer followed by
eventual activation of the PI3K/Akt signaling network.1,2 This cru-
cial hetero-dimerization of Her3 has been suggested as a molecular
basis of the acquired resistance in a subset of NSCLCs and breast
cancer.7,9 These findings, in addition to the fact that Her3 is over-
expressed and deregulated in several human cancers,9–13 have
inspired the development of antibody-based antagonists such as
Pertuzimab which target the ligand binding domain of Her3.14–17
Here we describe our efforts to develop Her3-targeting small
molecules that can down-regulate Her3-dependent signaling. We
hypothesized that ATP-competitive Her3 ligands may exhibit
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Corresponding author at present address: Dana Farber Cancer Institute,
Longwood Center, Room 2209, 360 Longwood Avenue, Boston, MA 02215, USA.
Tel.: +1 617 582 8590; fax: +1 617 582 8615.
These authors equally contributed to this work.
0960-894X/Ó 2015 Elsevier Ltd. All rights reserved.