M.C. Vlasiou and A.A. Hatahta
Journal of Molecular Structure 1232 (2021) 130052
The last years more and more scientists are using computa-
tional chemistry and theoretical tools to evaluate their molecular
structures [19-21]. Moreover, some researchers are using computa-
tional tools to evaluate the biological activity of the molecules of
interest [22-26]. This is because of the quick results that the com-
putational tool is giving to the researcher, and the added scientific
value to the findings. All that, at minimum cost and resources. As
the technological improvements are running fast, more and more
theoretical tools are going to save time to the researcher and give
a different perspective, using the predictive character of the com-
puterized models.
40% aqueous NaOH solution (15 mL) was gradually added. 4-
dimethylamino benzaldehyde (0.003 mol) was added and the re-
action took place for 20 h at 25°C. Any precipitate formed was re-
moved by filtration and the filtrate was acidified with dilute HCl
and then extracted with chloroform. Orange solid, M. P: 54-55 °
C; 1H NMR (300 MHz, DMSO-d6): δ 2.34 (s, -CH3), 3.06 (s, -CH3),
5.35 (s, -OH), 7.02 (m, -CH aromatic), 7.34 (m, -CH aromatic), 8.33
(d, -H) ppm.
2.3.3. Synthesis of (E)-1-(2-hydroxy-5methoxyphenyl)-
3-(2-nitrophenyl) prop-2-en-1-one
In a round bottom flask (100 ml), to an ethanolic solution
(20 ml) of 1-(4-hydroxy-3methoxyphenyl) ethanone 0.003 mol)
a 40% aqueous NaOH solution (20 mL) was gradually added. 2-
nitrobenzaldehyde (0.003 mol) was added and the reaction took
place for 24 h at 25°C. Any precipitate formed was removed by fil-
tration and the filtrate was acidified with dilute HCl. Yellow-green
solid, M. P: 57-59 ° C; 1H NMR (300 MHz, DMSO-d6): δ 3.84 (s, -
CH3), 5.33 (s, -OH), 7.10 (m, -CH aromatic), 7.27 (m, -CH aromatic),
7.79 (m, -CH aromatic), 7.89 (m, -CH aromatic), 8.21 (m, -CH aro-
matic), 8.60 (d, -H).
Herein, we propose the synthesis of some chalcone ana-
logues, and their complexation with Zn (II) metal ions. In total,
6 molecules were prepared and evaluated spectroscopically, both
in situ and theoretically. More specifically, we used TD-DFT studies
[26-31], to evaluate our chalcone derivatives in terms of structure
and activity, molecular docking [32-35], to evaluate their interac-
tion with human serum albumin (HSA) and spectroscopy to eval-
uate their binding interactions with bovine serum albumin (BSA).
The biological activity of the chalcone derivatives, was compared
with the biological activity of their counter Zn complexes.
2.4. Synthesis of Zinc (II) Complexes
2. Experimental
Zn (II) complexes with ligands L1-L3
2.1. Materials
An ethanolic solution (30 ml) of Zn (II) chloride (0.01 mol) was
added to a refluxing solution of appropriate chalcone analogue L1-
L3 (0.02 mol) in ethanol (30 ml). The reaction mixture was refluxed
for 6 h. The coloured complexes were obtained, filtered off, washed
with ethanol and dried under vacuum. Elemental Analysis: L1: C,
54.84; H, 3.45; Cl, 10.12; N, 4.00; O, 18.26; Zn, 9.33. L2: C, 62.04;
H, 5.21; Cl, 10.17; N, 4.02; O, 9.18; Zn, 9.38. L3: C, 52.45; H, 3.30;
Cl, 9.68; N, 3.82; O, 21.83; Zn, 8.92. Molar Conductance (M hos.cm2
mol−1): C1: 12.03, C2: 12.09, C3: 11.99.
2-nitrobenzaldehyde,
2-(methylamino)
benzaldehyde,
2-
hydroxy-5-methylphenyl ethanone, 1-(2-hydroxy-5-methylphenyl)
ethanone, 4-hydroxy-3-methoxyphenyl ethanone, were purchased
from Merck. Solvents were used without any further purifica-
tion. Other reagents were of analytical grade. BSA (bovine serum
albumin) (purity ≥ 98%) was purchased from Merck.
2.2. Instruments
2.5. Theoretical Studies
All the chalcone analogues and their zinc complexes were char-
acterized by 1HNMR, recorded on Bruker 300 MHz spectrometer
using DMSO-d6 as solvent and TMS as an internal standard. The
chemical shifts were expressed in δ ppm. The absorption spectrum
of all the reaction mixtures was then taken in a range of 200-400
nm in a JASCO (Tokyo, Japan) UV-visible spectrophotometer using
a 1cm path length quartz cuvette.
2.5.1. Optimization and vibration frequency calculations were made
at B3LYP level with ORCA version 4.0.1 program
B3LYP is a hybrid density functional theory method. Among
the ever-increasing number of DFT methods, the hybrid functional
B3LYP, as a good compromise between computational cost, cover-
age, and accuracy of results [36]. It has become a standard method
used to study organic chemistry in the gas phase. UV-vis spec-
trums at the same level calculated by time-dependent density
functional theory (TD-DFT) method. ORCA input files were created
by AVOGADRO version 1.2.0 software. HOMO energy (EHOMO) and
LUMO energy (ELUMO) were taken from the output file. Chalcone
analogues and their zinc complexes were docked against human
serum albumin. Molecular docking studies were carried out by us-
ing iGEMDOCK 2.1 software [11]. The HSA coded crystal structure
was selected from the Protein Data Bank (www.rcsb.org). The pop-
ulation size was = 200, generations = 70, number of solutions = 3.
2.3. Synthesis of chalcones analogues
2.3.1. Synthesis of (E)-1-(2-hydroxy-5-methylphenyl)-3-
(2-nitrophenyl) prop-2-en-1-one
In a round bottom flask (100 ml), to a methanolic solution
(20 ml) of 2-hydroxy-5-methylphenyl ethanone (0.003 mol)
a
40% aqueous NaOH solution (15 mL) was gradually added. 2-
nitrobenzaldehyde (0.003 mol) was added and the reaction took
place for 20 h at 25°C. Any precipitate formed was removed by
filtration and the filtrate was acidified with dilute HCl and then
extracted with chloroform. The concentrate of the chloroform was
chromatographed over silica gel to obtain the desired product.
2.6. Effect of the ligand and the complex on the absorption spectrum
of BSA
The compound then crystallized from chloroform-petroleum ether
The effect of the ligands and their corresponding complexes,
on the absorption spectrum of BSA, was studied using UV–visible
spectrophotometry. Briefly, BSA (5 μM) were incubated in the ab-
sence and presence of 2-9 μM of L1, L2, L3, C1, C2 and C3 for 30
min at RT.
o
(50:50). Olive green solid, M.P: 55-57
C; 1H NMR (300 MHz,
DMSO-d6): δ 2.36 (s,-CH3), 5.37 (s, -OH), 7.04 (m, -CH aromatic),
7.36 (m, -CH aromatic), 7.44 (m, -CH aromatic), 7.65 (m, -H), 7.89
(m, -CH), 8.23 (m, -CH), 8.64 (m. -H) ppm.
2.3.2. Synthesis of (E)-3-(4-dimethylamino) phenyl)-1-(2-hydroxy-5-
methylphenyl) prop-2-en-1-one
2.7. Conductance studies on the Zn-complexes interaction with BSA
In a round bottom flask (100 ml), to a methanolic solution
All stock solutions were prepared freshly by weighing and using
freshly prepared solvents. Conductivity measurements were made
(20 ml) of 2-hydroxy-5-methylphenyl ethanone (0.003 mol)
a
2