Organic Process Research & Development
Article
Lab-Scale Synthesis of 2-((6-Chloro-3-methyl-2,4-
dioxo-3,4-dihydropyrimidin-1(2H)-yl)methyl)-
benzonitrile (10). To a 1 L four-necked round bottomed flask
were charged 2-((6-chloro-3-methyl-2,4-dioxo-3,4-dihydropyr-
imidin-1(2H)-yl)methyl)benzonitrile (9) (27.54 g, 99.90 mmol,
1.0 equiv), 8·TsOH (30.00 g, 99.98 mmol, 1.0 equiv), potassium
carbonate (27.61 g, 199.8 mmol, 2.00 equiv), 2-PrOH (210
mL), and water (3 mL). This suspension was heated to 70 °C
and stirred for 18 h. The reaction mixture was cooled to 25 °C
and evaporated under reduced pressure. The resulting
suspension was stirred at room temperature for 2 h. The solid
was collected by filtration, and the cake was washed with water
(90 mL) and dried at 60 °C under vacuum to yield 10 as a
colorless solid (34.13 g, 93% yield, 95.9 area % HPLC purity).
[α]2D5 + 21.4° (c = 0.977, methanol); IR (KBr): 3387, 3319,
3202, 2941, 2853, 2226, 1690, 1676, and 1628 cm−1. 1H NMR
(500 MHz, CDCl3): δ 7.61 (dd, J = 7.5, 1.5 Hz, 1H), 7.51 (td, J =
8.0, 1.5 Hz, 1H), 7.32 (t, J = 7.5 Hz, 1H), 7.11 (d, J = 8.0 Hz,
1H), 5.73 (bs, 1H), 5.67 (bs, 1H), 5.34 (s, 1H), 5.32 (d, J = 16.0
Hz, 1H), 5.13 (d, J = 16.0 Hz, 1H), 3.25 (s, 3H), 3.12−3.20 (dm,
1H), 2.88 (d, J = 11.5 Hz, 1H), 2.72 (t, J = 11.5 Hz, 1H), 2.55 (t,
J = 11.5 Hz, 1H), 2.47 (tt, J = 11.5, 3.5 Hz, 1H), 1.91 (dd, J =
13.0, 3.5 Hz, 1H), 1.70 (dt, J = 13.5, 3.5 Hz, 1H), 1.57 (qd, J =
13.0, 3.5 Hz, 1H), 1.46 (qt, J = 13.0, 4.0 Hz, 1H). 13C NMR (126
MHz, CDCl3): δ 174.8, 163.2, 159.8, 153.0, 141.0, 133.6, 133.3,
128.2, 127.2, 117.7, 110.7, 91.3, 54.0, 51.9, 46.4, 42.5, 28.2, 27.3,
24.3. HRMS (m/z, ESI): calcd 368.1717 for C19H21N5O3 (M +
H)+; found, 368.01731. HPLC: YMC-Pack ODS-A302 column
(5 μm, 150 × 4.6 mm), MeCN/aq H3PO4 (0.020 M) 3/7, flow
rate: 0.5 mL/min, oven temperature: 25 °C, detection: 225 nm
(UV), tR: 8.7 min (10), tR: 25.1 min (9).
Lab-Scale Synthesis of Alogliptin (1). To a 2 L four-
necked round bottomed flask, H2O/2-PrOH (1/1, 1.5 L),
pyridine (550 μL, 6.9 mmol, 0.05 equiv), and 10 (50.0 g, 136
mmol, 1.00 equiv) were charged. PIDA (48.2 g, 150 mmol, 1.1
equiv) was added to the solution, and then, the suspension was
stirred for 3 h at 20 °C. The solvents (750 50 mL) were
evaporated in vacuo at 40 °C, and then, EtOAc (500 mL) was
added, and the aqueous layer was separated. The aqueous layer
was washed by EtOAc (500 mL) and treated with K2CO3 (400
g) at 0−15 °C. The organic products were extracted with
toluene (100 mL) and 2-PrOH (150 mL), followed by rinsing
with saturated aq NaCl (50 mL). After evaporation of the
organic solvents, toluene (150 mL) was added and evaporated
for solvent substitution. 1 was crystallized from toluene (100
mL) and heptane (150 mL, dropwise for 1 h) as a yellowish
white crystalline solid (40.3 g, 87.2% yield, 99.31 area % HPLC
purity). HPLC: YMC-Pack ODS-A302 column (5 μm, 150 ×
4.6 mm), MeCN/aq H3PO4 (0.020 M) 3/7, flow rate: 0.5 mL/
min, oven temperature: 25 °C, detection: 225 nm (UV), tR: 3.2
min (1), tR: 8.7 min (10).
7.28−7.42 (m, 4H), 7.22 (d, J = 8.0 Hz, 1H), 5.43 (s, 1H), 5.13
(d, J = 16.0 Hz, 1H), 5.05 (d, J = 16.0 Hz, 1H), 3.25−3.45 (m,
2H), 3.03 (s, 3H), 2.77−2.96 (m, 2H), 2.57−2.77 (m, 1H),
1.95−2.08 (m, 1H), 1.68−1.80 (m, 1H), 1.47−1.63 (m, 2H).
13C NMR (126 MHz, D2O) Peaks of ethanol were detected: δ
175.3, 165.4, 160.4, 152.9, 140.1, 47.1, 136.3, 133.3, 133.7,
131.1, 128.9, 128.3, 128.2, 128.0, 118.0, 109.4, 90.2, 57.5, 52.2,
51.7, 46.9, 27.9, 27.2, 21.2, 16.9. HRMS (m/z, ESI): calcd
340.1768 for C19H21N5O3 (M + H)+; found, 340.1769. HPLC:
SHISEIDO MG II column (5 μm, 150 × 4.6 mm), 0.02 M aq
H3PO4/MeCN = 6/4, flow rate: 1.0 mL/min, oven temperature:
25 °C, detection: 278 nm (UV), tR: 2.1 min (1), tR: 2.5 min (10),
tR: 6.0 min (11). Chiral HPLC: SUMICHIRAL OA-4600R
column (5 μm, 250 × 4.6 mm), hexane/2-propano; /methanol/
trifluoroacetic acid = 430/45/25/1, flow rate: 1.0 mL/min, oven
temperature: 35 °C, detection: 275 nm (UV), tR: 42.7 min
(enantiomer), tR: 45.4 min (1).
Lab-Scale Synthesis of (R)-1-(3-(2-Cyano-5-fluoroben-
zyl)-1-methyl-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-
yl)piperidine-3-carboxamide (14). To a 50 mL round
bottomed flask equipped with a reflux condenser were added
H2O/2-PrOH (8/3, 27.5 mL), 8·TsOH (5.0 g, 16.6 mmol, 0.99
equiv), and 2-((6-chloro-3-methyl-2,4-dioxo-3,4-dihydropyri-
midin-1(2H)-yl)methyl)-4-fluorobenzonitrile (13) (4.9 g, 16.8
mmol, 1.00 equiv). K2CO3 (4.6 g, 33.2 mmol, 1.98 equiv) was
added, and then, the reaction was heated to 65 °C and stirred for
24 h. During the reaction, the resulting amide started to
crystallize. After the addition of H2O (30 mL), the reaction
mixture was cooled to 0 °C, stirred for 1 h, and then filtered. The
crystals obtained were washed with H2O (10 mL) and dried in
vacuo at 45 °C to give a reddish white crystalline solid (5.6 g,
1
87% yield, 97.6 area % HPLC purity). H NMR (500 MHz,
CDCl3): δ 7.70 (dd, J = 8.7 Hz, 5.2 Hz, 1H), 7.10 (td, J = 8.0 Hz,
2.5 Hz, 1H), 6.90 (dd, J = 9.1 Hz, 2.5 Hz, 1H), 5.66 (brs, 1H),
5.48 (brs, 1H), 5.42 (s, 1H), 5.38 (d, J = 16.08 Hz, 1H), 5.17 (d,
J = 16.4 Hz,1H), 3.34 (s, 3H), 3.14−3.28 (m, 1H), 2.94 (d, J =
12.0 Hz, 1H), 2.82 (t, J = 10.6 Hz, 1H), 2.64 (t, J = 10.9 Hz,1H),
2.49−2.59 (m, 1H), 1.92−2.07 (m, 1H), 1.80 (m, 1H), 1.62−
1.72 (m, 1H), 1.45−1.60 (m, 1H). HPLC: SHISEIDO MG II
column (5 μm, 150 × 4.6 mm), 0.02 M aq H3PO4/MeCN = 6/4,
flow rate: 1.0 mL/min, oven temperature: 25 °C, detection: 278
nm (UV), tR: 2.7 min (14).
Lab-Scale Synthesis of Trelagliptin (12). To a 100 mL
four-necked round bottomed flask, H2O/2-PrOH (1/1, 60 mL),
pyridine (21.4 μL, 0.26 mmol, 0.05 equiv), and 14 (2.0.0 g, 5.2
mmol) were charged. PIDA (1.84 g, 5.7 mmol, 1.10 equiv) was
added to the solution, and then, the suspension was stirred for 3
h at 20 °C. The solvents (ca. 40 mL) were evaporated in vacuo at
30 °C, and then, EtOAc (20 mL) was added, and the aqueous
layer was separated. The aqueous layer was washed with EtOAc
(20 mL) and treated with K2CO3 (16 g) at 0−15 °C. The
organic products were extracted with toluene (6 mL) and 2-
PrOH (6 mL), followed by rinsing with saturated aq NaCl (10
mL). After evaporation of the organic solvents, toluene (6 mL)
was added and evaporated for solvent substitution. Product 12
was crystallized from toluene (6 mL) and heptane (6 mL,
dropwise for 1 h) at 0 °C as a white crystalline solid (1.6 g, 86%
yield, 99.2 area % HPLC purity). 1H NMR (500 MHz, CDCl3):
δ 7.69 (dd, J = 8.5 Hz, 5.4 Hz, 1H), 7.09 (td, J = 8.0 Hz, 2.5 Hz,
1H), 6.86 (dd, J = 9.0 Hz, 2.4 Hz, 1H), 5.39 (s, 1H), 5.23−5.32
(m, 2H), 3.32 (s, 3H), 2.99−3.05 (m, 1H), 2.87−2.98 (m, 2H),
2.61 (m, 1H), 2.41 (m,1H), 1.95 (dd, J = 12.8 Hz, 3.9 Hz, 1H),
1.72−1.83 (m, 1H), 1.56−1.67 (m, 1H), 1.30 (brs, 2H), 1.23 (d,
Lab-Scale Synthesis of Alogliptin (1) Benzoate. 1 (35 g,
103 mmol, 1.00 equiv) was dissolved in hot IPA (140 mL, 60
°C) then filtered through a membrane filter to a 1 L four-necked
round bottomed flask. Benzoic acid (13.8 g, 113 mmol, 1.1
equiv) in EtOAc (140 mL) was added dropwise to the solution
for 1 h at 60 °C. The crystals were aged for 19 h at room
temperature. The resulting solid material was filtered and dried
in vacuo at 50 °C to give a slightly yellowish crystalline solid
(43.9 g, 92% yield, 99.79 area % HPLC purity). mp 184.0−186.1
°C; IR (KBr): 3082, 2976, 2961, 2860, 2230, 1695, 1609, 1591,
1445 and 1362 cm−1. 1H NMR (500 MHz, D2O): δ 7.76 (d, J =
7.0 Hz, 2H), 7.62 (d, J = 7.5 Hz, 1H), 7.54 (t, J = 7.5 Hz, 1H),
334
Org. Process Res. Dev. 2021, 25, 327−336