Organic Letters
Letter
Owing to the structural complexity of natural siderophores,
simple bidentate ligands, such as catechol or ortho-pyridone,
are often employed as antibiotic carriers. However, natural
siderophores have unique advantages, such as an effective
cellular entry as a result of an optimized siderophore−receptor
interaction, a possibility for cytoplasmic delivery of a warhead,
and/or species-selective characteristics that minimize collateral
damage to beneficial microbiota. In using a natural siderophore
as an antibiotic delivery vehicle, one of the key considerations
is the selection of an appropriate conjugation site that does not
disturb the siderophore−receptor interactions, which is
essential for maximizing the uptake efficiency. In that respect,
the structural features of natural sideromycins often serve as
the basis for designing novel antibiotic conjugates (Figures S1
and S2 of the Supporting Information).17−19 When a natural
model is not available, information regarding the siderophore−
receptor complex structures,20 established structure−function
relationships,21,22 or synthetic accessibility23−25 can be
considered for the rational design of siderophore−antibiotic
conjugates (Figure S2 of the Supporting Information).
Our previous study on the structure−function relationship
of FimB revealed the stereoselective nature of the cognate
transporter system.26 However, constructive information for
selecting a suitable antibiotic conjugation site on FimB was
practically unavailable. Therefore, we undertook a semi-
shotgun approach through which multiple positions were
picked without considerable preconception. Specifically, three
positions, C-4, C-22, and C-32 (Figure 1), were selected for
manipulation because these sites were moderately spread apart
allowing for sufficient structural variation and were less likely
to disturb iron−FimB complexation. In addition, cefaclor (Cec,
17), a second-generation cephalosporin inhibiting the biosyn-
thesis of the periplasmic peptidoglycan layer, was chosen as the
model antibiotic, considering the proposed iron delivery by
FimB up to the periplasm.15,26
Although the construction of the fimsbactin skeleton largely
depended upon our previously established synthetic proto-
col,26,27 several key alterations were implemented to
successfully generate the corresponding antibiotic conjugates.
First, for the functionalization at C-4 and C-22, a reactive
handle must be introduced on the catechol moiety. Nolan and
co-workers prepared enterobactin-based conjugates through
the derivatization of the cognate site as a carboxylic acid,
although it required a slightly prolonged synthetic sequence.18
For simpler precursor preparation as well as facile late-stage
functionalization, we introduced an iodide because of its
resistance to the reaction conditions employed for the
fimsbactin skeleton construction as well as its high reactivity
for various transition-metal-catalyzed cross-coupling reactions.
The required iodide could be easily incorporated through
regioselective iodination of o-vanillin (Scheme 1A).28 After the
cleavage of the methyl ether releasing catechol 6, subsequent
synthetic elaboration was performed as previously de-
scribed.26,27 Briefly, the vicinal diol was protected with o-
xylene, and subsequent Pinnick oxidation provided acid 7a.
This intermediate was then coupled with L-threonine methyl
ester, and subsequent dehydrative cyclization catalyzed by
molybdenum oxide formed an oxazoline ring. Lastly, treatment
with potassium trimethylsilanolate provided excellent yields of
corresponding potassium carboxylate salt 8a.
Scheme 1. Preparation of Building Blocks 8a and 10a
prepared from a known putrescine derivative (9)29 via amide
coupling with N-Fmoc- and O-TBDMS-protected L-serine,
followed by the removal of the Fmoc moiety (Scheme 1B).
The synthesis of FimB−Cec conjugates was continued
through combinatorial coupling between oxazoline carboxylate
(8a/8b) and putrescine derivative (10a/10b) building blocks,
as depicted in Scheme 2. Following desilylation, the resulting
intermediates (11a/11b/11c) were treated with catecholic
acid chlorides (12a/12b) to complete the construction of
corresponding FimB skeletons (13a/13b/13c).
At this stage, two different synthetic routes were formulated
to attach the linkers. We designed two separate linkers (14 and
15), whose termini were equipped with benzyl esters suitable
for conjugation with cefaclor. Alkyne linker 14 was easily
attached to iodine-containing intermediates, 13a and 13b,
through the Pd(0)/Cu(I)-catalyzed Sonogashira reaction,
yielding compounds 16a and 16b, respectively. For introduc-
tion of the linker for C-32 derivatization, the Boc protective
group of compound 13c was removed under acidic conditions,
and the subsequent amide bond formation with linker 15
produced compound 16c.
For conjugation with cefaclor (17), all precursors (16a/
16b/16c) were subjected to global deprotection under Pd(0)-
catalyzed hydrogenolysis conditions, during which complete
reduction of the alkynes in compounds 16a and 16b was
accompanied. The resulting terminal acids were then
condensed with N-hydroxysuccinimide (NHS) to produce
corresponding NHS esters. Each of these activated esters was
treated with cefaclor (17), and chemoselective amide linkage
formation among them was observed on the basis of high-
performance liquid chromatography (HPLC) analysis (Figure
S3 of the Supporting Information). After purification through
semi-preparative HPLC, all desired FimB−Cec conjugates
(18a/18b/18c) could be successfully secured. Notably,
significant decomposition of the FimB−Cec conjugates
involving hydrolytic oxazoline ring opening was observed
when common ion-pairing agents, such as trifluoroacetic and
formic acids, were included in the eluent solvents used in
HPLC purification. However, this problem could be resolved
using volatile ammonium bicarbonate as the ion-pairing agent
(pH 7.2, 10 mM aqueous solution).
Precursor 10a was designed for late-stage functionalization
at C-32, which would involve a linker attachment via amide
bond formation, following Boc deprotection. It could be
The antimicrobial activities of all three FimB−Cec
conjugates against A. baumannii ATCC 17978 possessing the
fimsbactin gene cluster were evaluated on the basis of the
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Org. Lett. 2021, 23, 5256−5260